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Gtdbtk 1.0.2 updates #19252

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merged 4 commits into from
Dec 13, 2019
Merged

Gtdbtk 1.0.2 updates #19252

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69ede90
Update build requirement, required libraries, and manuscript DOI.
aaronmussig Dec 13, 2019
29820a3
Update post-link message.
aaronmussig Dec 13, 2019
a7aacbe
Update post-link message.
aaronmussig Dec 13, 2019
3643931
Update post-link message.
aaronmussig Dec 13, 2019
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9 changes: 7 additions & 2 deletions recipes/gtdbtk/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@ source:
sha256: b8fb65555d86301c55bef0f4722f6ae0d0bd974d2a04cbb71973b51dc0013655

build:
number: 0
skip: True # [osx]
number: 1
skip: True # [not linux64]

requirements:
host:
Expand All @@ -25,6 +25,9 @@ requirements:
- pplacer >=1.1.alpha17
- fastani >=1.2
- fasttree >=2.1.9
- matplotlib
- numpy
- scipy

test:
imports:
Expand All @@ -47,3 +50,5 @@ extra:
skip-lints:
- should_be_noarch_python
- should_not_use_skip_python
identifiers:
- doi:10.1093/bioinformatics/btz848
3 changes: 1 addition & 2 deletions recipes/gtdbtk/post-link.sh
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Expand Up @@ -10,8 +10,7 @@ echo "
2. Manually download the latest reference data:
https://github.com/Ecogenomics/GTDBTk#gtdb-tk-reference-data

2b. Set the GTDBTK_DATA_PATH environment variable in the files:
2b. Set the GTDBTK_DATA_PATH environment variable in the file:
${PREFIX}/etc/conda/activate.d
${PREFIX}/etc/conda/deactivate.d

" > "${PREFIX}"/.messages.txt