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Update PGCGAP to v1.0.4 #16031

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merged 3 commits into from
Jun 20, 2019
Merged

Update PGCGAP to v1.0.4 #16031

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ae593b8
add Plot_COG_Abundance.R
Jun 20, 2019
d3735d1
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
Jun 20, 2019
e54b1b8
Update meta.yaml
Jun 20, 2019
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3 changes: 2 additions & 1 deletion recipes/pgcgap/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ cp Functions/Pan/fmplot.py $PREFIX/bin/
cp Functions/COG/COG.pl $PREFIX/bin/
cp Functions/COG/get_flag_relative_abundances_table.pl $PREFIX/bin/
cp Functions/COG/Plot_COG.R $PREFIX/bin/
cp Functions/COG/Plot_COG_Abundance.R $PREFIX/bin/

cp Functions/ANI/get_ANImatrix.pl $PREFIX/bin/
cp Functions/ANI/Plot_ANIheatmap.R $PREFIX/bin/
Expand All @@ -20,5 +21,5 @@ chmod a+x $PREFIX/bin/get_flag_relative_abundances_table.pl
chmod a+x $PREFIX/bin/Plot_COG.R
chmod a+x $PREFIX/bin/get_ANImatrix.pl
chmod a+x $PREFIX/bin/Plot_ANIheatmap.R

chmod a+x $PREFIX/bin/Plot_COG_Abundance.R
pgcgap --version
7 changes: 4 additions & 3 deletions recipes/pgcgap/meta.yaml
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@@ -1,14 +1,13 @@
{% set name = "pgcgap" %}
{% set version = "1.0.3" %}
{% set sha256 = "6221262d0de83284e4636488e385a953297ad5f3f470791cb20213bc752c0661" %}
{% set version = "1.0.4" %}

package:
name: '{{ name }}'
version: '{{ version }}'

source:
url: https://github.com/liaochenlanruo/pgcgap/archive/v{{ version }}.tar.gz
sha256: '{{ sha256 }}'
sha256: 100b17f46baf9cb3613275219c4f885229f8ddfd3d94cdc458aa65688a94b5aa

build:
number: 0
Expand Down Expand Up @@ -39,10 +38,12 @@ requirements:
- perl-data-dumper >=2.173
- perl-pod-usage >=1.69
- perl-getopt-long >=2.50
- perl-parallel-forkmanager
- htslib >=1.9
- snippy >=4.3.6
- sickle-trim >=1.33
- r-ggplot2
- r-gplots
- r-corrplot
- matplotlib
- seaborn
Expand Down