[ALE-Amalgamated likelihood estimation] Add ALE recipes

recipes/ALE/meta.yaml

@@ -0,0 +1,33 @@
+{% set name = 'ALE' %}
+{% set version = '0.5' %}
+{% set sha256 = '1efd3bc5814232a7a5240e935fb2aba7c1d291e8' %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+
+source:
+  git_url: https://github.com/ssolo/ALE
+  git_revision: {{ revision }}
+  sha256: unused
+
+requirements:
+  build:
+  - {{ compiler('c') }}
+  - cmake
+  - bpp-core
+  - bpp-seq
+  - bpp-phy
+  run:
+  - bpp-core
+
+#test:
+#  commands:
+
+about:
+  home: https://github.com/ssolo/ALE
+  license: GPLv3
+  summary: "Amalgamated Likelihood Estimation. Reconstruction of reconciled gene trees and estimation of DTL rates from a sample of gene trees and a rooted species tree."

recipes/ale-dtl/build.sh

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+#!/bin/bash
+
+export LIBRARY_PATH="${PREFIX}/lib"
+export LD_LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="-L${PREFIX}/lib"
+export CPPFLAGS="-I${PREFIX}/include"
+
+mkdir build && pushd build
+cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_PREFIX_PATH=${PREFIX} -DCMAKE_INSTALL_RPATH:STRING=${PREFIX}/lib -DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE -DCMAKE_INSTALL_LIBDIR=${PREFIX}/lib ..
+
+make -j 4
+make install

recipes/ale-dtl/meta.yaml

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+{% set name = 'ale-dtl' %}
+{% set version = '0.5' %}
+{% set revision = '1efd3bc5814232a7a5240e935fb2aba7c1d291e8' %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+
+source:
+  git_url: https://github.com/ssolo/ALE
+  git_revision: {{ revision }}
+  sha256: unused
+
+requirements:
+  build:
+  - {{ compiler('c') }}
+  - cmake
+  - bpp-core
+  - bpp-seq
+  - bpp-phyl
+  run:
+  - bpp-core
+  - bpp-seq
+  - bpp-phyl
+
+test:
+  commands:
+  - ALEobserve -h
+
+extra:
+  skip-lints:
+    - uses_git_url
+
+about:
+  home: https://github.com/ssolo/ALE
+  license: GPLv3
+  summary: "Amalgamated Likelihood Estimation. Reconstruction of reconciled gene trees and estimation of DTL rates from a sample of gene trees and a rooted species tree."