Code

Added fastq_utils recipe#13473

Code

Merged

pinin4fjords merged 21 commits intobioconda:masterbioconda/bioconda-recipes:masterfrom ebi-gene-expression-group:fastq_utilsebi-gene-expression-group/bioconda-recipes:fastq_utilsCopy head branch name to clipboardFeb 5, 2019

+74

Commits

Commits on Feb 5, 2019

• Added fastq_utils recipe

  pinin4fjords

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  8b2c8fc

• Remove noarch

  pinin4fjords

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  3b5007f

• Attempt to fix curses error for Samtools following that recipe's example

  pinin4fjords

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  e9c4baa

• Attempt to resolve samtools compile issue

  pinin4fjords

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  3764f0f

• Simplification and use of bam.h from Conda Samtools package

  pinin4fjords

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  be506f8

• Probably futile attempt at fix

  pinin4fjords

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  e75b438

• Try adding a conda build file

  pinin4fjords

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  9bd0a12

• Tidy up spacing

  pinin4fjords

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  f7a25da

• Small futile tweaks

  pinin4fjords

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  3fc710e

• Does this work to use newer GCC?

  pinin4fjords

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  de15433

• Reinstate buld config, bump build

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  112dccc

• Add compiler to host

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  d5fc78c

• Revert "Add compiler to host"

  Show description for c86fc9d
  pinin4fjords

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  c86fc9d

• Replace gcc call with x86_64-apple-darwin13.4.0-clang

  pinin4fjords

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  25bfa0b

• sed the correct Makefile, use Make variable syntax

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  c438de3

• Attempted fix for cannot find -lz

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  59e5dc4

• Hopefully LDFLAGS is what's needed

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  45dbe65

• Okay, source package doesn't use LDFLAGS, use CFLAGS to pass options

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  f948fa1

• Try with older GCC

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  cccd14b

• Oh my god it works - tidy up

  pinin4fjords

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  81c1aaf

• Bumped runtime samtools to 1.9, removed legacy compiler requirement

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  5562ed0