A few version updates

build-fail-blacklist

@@ -845,9 +845,6 @@ recipes/bioconductor-diffbind/2.0.9
 recipes/bioconductor-diffbind/2.2.12
 recipes/bioconductor-xcms/1.52.0
 
-# post-link error
-# recipes/bioconductor-primirtss
-
 # r-dagitity missing -> missing of V8 in cf
 recipes/r-pcalg
 recipes/bioconductor-epinem
@@ -900,9 +897,6 @@ recipes/bioconductor-mapkl
 # Missing r-hiver
 recipes/bioconductor-moonlightr
 
-# Missing r-rclipboard
-# recipes/bioconductor-prostar
-
 # package ‘rjags’ could not be loaded (linking issue)
 recipes/bioconductor-madseq
 
@@ -972,11 +966,10 @@ recipes/bioconductor-icheck
 
 # Compilation errors (and dependencies)
 # recipes/bioconductor-ggtree
-# recipes/bioconductor-rtandem
+# recipes/bioconductor-sapfinder
 # recipes/bioconductor-shinytandem
 # recipes/bioconductor-pga
 # recipes/bioconductor-proteoqc
-# recipes/bioconductor-sapfinder
 recipes/bioconductor-bgmix
 recipes/bioconductor-singlecelltk
 recipes/bioconductor-philr

recipes/bioconductor-pga/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.12.0" %}
+{% set version = "1.12.1" %}
 {% set name = "PGA" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f1a70d32276232c239cf7fe5ff102cb9
+  md5: 9d81a4174770180665ff1d6e06fc45ae
 build:
   number: 0
   rpaths:
@@ -68,4 +68,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-2
   summary: 'This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.'
+extra:
+  parent_recipe:
+    name: bioconductor-pga
+    path: recipes/bioconductor-pga
+    version: 1.12.0
 

recipes/bioconductor-proteoqc/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.18.0" %}
+{% set version = "1.18.1" %}
 {% set name = "proteoQC" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c733881810b96aa22096e2c290c5799d
+  md5: d8b9baf4fbe7c1615a3afc90c4dfbce5
 build:
   number: 0
   rpaths:
@@ -58,4 +58,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: LGPL-2
   summary: 'This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.'
+extra:
+  parent_recipe:
+    name: bioconductor-proteoqc
+    path: recipes/bioconductor-proteoqc
+    version: 1.18.0
 

recipes/bioconductor-sapfinder/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.20.0" %}
+{% set version = "1.20.1" %}
 {% set name = "sapFinder" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 39da7f2c1d2a4832b64cee25d9bdc6b2
+  md5: 1d4171bf15a1a4b7eb67ef1154f37abe
 build:
   number: 0
   rpaths:
@@ -39,4 +39,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-2
   summary: 'sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.'
+extra:
+  parent_recipe:
+    name: bioconductor-sapfinder
+    path: recipes/bioconductor-sapfinder
+    version: 1.20.0
 

recipes/bioconductor-shinytandem/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.20.0" %}
+{% set version = "1.20.1" %}
 {% set name = "shinyTANDEM" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ebddfcdaff66bac03d0982c93f572d5
+  md5: 214390e95f00e0aa251e71caae2f37c9
 build:
   number: 0
   rpaths:
@@ -37,4 +37,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.'
+extra:
+  parent_recipe:
+    name: bioconductor-shinytandem
+    path: recipes/bioconductor-shinytandem
+    version: 1.20.0