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t-coffee 12.00.7fb08c2 #12594

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merged 4 commits into from
Dec 12, 2018
Merged

t-coffee 12.00.7fb08c2 #12594

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1c5655b
t-coffee 12.00.7fb08c2
pditommaso Dec 12, 2018
eb54e12
add viennarna to deps
SchwarzMarek Dec 12, 2018
cffdebc
t-coffee 12.00.7fb08c2 (2)
pditommaso Dec 12, 2018
5aff296
t-coffee 12.00.7fb08c2 (4)
pditommaso Dec 12, 2018
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9 changes: 9 additions & 0 deletions recipes/t-coffee/bin/.t-coffee-pre-link.sh
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Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
echo "** WARNING: This T-Coffee recipe is still under development **"
echo ""
echo "It does not contain all required packages to use all T-Coffee modes."
echo "We suggest to use the Bioconda 't_coffee' recipe instead or download it"
echo "from the web site http://www.tcoffee.org"
echo ""
read -u 1 -p "* Please confirm you want to continue with the installation [y/n] " -n 1 -r
echo ""
if [[ ! $REPLY =~ ^[Yy]$ ]]; then exit 1; fi
5 changes: 5 additions & 0 deletions recipes/t-coffee/build.sh
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Expand Up @@ -15,3 +15,8 @@ make
# install tcoffee in the target bin directory
mkdir -p $PREFIX/bin
cp t_coffee $PREFIX/bin

# to be moved in a separate recipe in the future
gfortran TMalign.f -o TMalign
cp TMalign $PREFIX/bin

5 changes: 3 additions & 2 deletions recipes/t-coffee/meta.yaml
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@@ -1,4 +1,4 @@
{% set version = "11.00.8cbe486" %}
{% set version = "12.00.7fb08c2" %}

package:
name: t-coffee
Expand All @@ -9,7 +9,7 @@ build:

source:
url: http://tcoffee.org/Packages/Stable/Latest/T-COFFEE_distribution_Version_{{ version }}.tar.gz
sha256: b8018433574ff7705c49cd974bebb06a48eb8bc5e38aaa9eb4f53f2e7778e72c
sha256: 6119514a0e36da4b4de88741b8c12f9c8ab653772b3952a011d4cb373beee44f

requirements:
build:
Expand All @@ -23,6 +23,7 @@ requirements:
- mafft
- muscle
- poa # [not osx]
- viennarna

test:
commands:
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