Batvi

recipes/batvi/build.sh

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+export C_INCLUDE_PATH=$C_INCLUDE_PATH:${PREFIX}/include
+export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:${PREFIX}/include
+export LIBRARY_PATH=$LIBRARY_PATH:${PREFIX}/lib
+export CFLAGS="-I$PREFIX/include"
+export LDFLAGS="-L$PREFIX/lib"
+mkdir -p $PREFIX/bin/msapipeline/msa
+mkdir -p $PREFIX/bin/bin
+mkdir -p $PREFIX/bin/BatMis-3.00/bin
+mkdir -p $PREFIX/bin/batindel/src
+./build.sh
+cp *.{sh,pl} $PREFIX/bin
+cp bin/*.{sh,pl} $PREFIX/bin/bin
+cp bin/cluster_bp $PREFIX/bin/bin
+cp msapipeline/*.{sh,pl} $PREFIX/bin/msapipeline
+cp msapipeline/msa/*.class $PREFIX/bin/msapipeline/msa
+cp BatMis-3.00/bin/* $PREFIX/bin/BatMis-3.00/bin
+cp batindel/src/penguin $PREFIX/bin/batindel/src

recipes/batvi/meta.yaml

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+package:
+  name: batvi
+  version: "1.04"
+
+
+source:
+  url: https://github.com/22noon/BatVI/archive/master.zip
+  path: src
+  sha256: 0072a56055998d0d67822d66128de1e84ea9d34770fd3752192ca1f93bf6569d
+
+requirements:
+  run:
+    - samtools
+    - blast
+    - bedtools
+    - picard
+    - bwa
+    - zlib
+    - openjdk
+
+  host:
+    - zlib
+    - openjdk
+
+  build:
+    - {{ compiler('c') }}
+
+build:
+  number: 1
+  string: cond
+about:
+  home: https://www.comp.nus.edu.sg/~bioinfo/batvi/
+  license: GPLv3+
+  summary: Detect viral integrations 
+
+test:
+  commands:
+    - echo "Run test data on the website.. "