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titancna: fix for hg38, remove conda build hacks #11447

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merged 2 commits into from
Oct 20, 2018
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titancna: fix for hg38, remove conda build hacks #11447

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e8fdf2b
titancna: fix for hg38, remove conda build hacks
chapmanb Oct 20, 2018
a97fd6c
Re-add r-base 3.4 pin to avoid 3.5 errors
chapmanb Oct 20, 2018
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26 changes: 5 additions & 21 deletions recipes/bioconductor-titancna/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,19 +6,19 @@ package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url: https://github.com/gavinha/TitanCNA/archive/8396703.tar.gz
url: https://github.com/gavinha/TitanCNA/archive/b39a30d.tar.gz
# - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
# - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
# - 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz'
sha256: 48316f9e6b0fc23aa8c1434f7610c074eb74c26c3652c408f7ca9b52394d9ea6
sha256: 70ffd6417ea10c0106ecac313677054ce3206aceb47e0b11deb1bac17f81f6e4
build:
number: 0
number: 1
rpaths:
- lib/R/lib/
- lib/
requirements:
host:
- r-base 3.4.*
- r-base 3.4.1
- perl # for adding in correct path references to scripts
- 'bioconductor-genomeinfodb >=1.8.7'
- 'bioconductor-genomicranges >=1.24.3'
Expand All @@ -32,24 +32,8 @@ requirements:
- r-domc
- bioconductor-snpchip
- r-stringr
# XXX build section shouldn't be necessary but host not
# loaded into build environment for some reason
build:
- r-base 3.4.*
- 'bioconductor-genomeinfodb >=1.8.7'
- 'bioconductor-genomicranges >=1.24.3'
- 'bioconductor-iranges >=2.6.1'
- 'bioconductor-rsamtools >=1.24.0'
- 'bioconductor-variantannotation >=1.18.7'
- 'r-foreach >=1.4.3'
- r-data.table
- r-dplyr
- r-optparse
- r-domc
- bioconductor-snpchip
- r-stringr
run:
- r-base 3.4.*
- r-base 3.4.1
- 'bioconductor-genomeinfodb >=1.8.7'
- 'bioconductor-genomicranges >=1.24.3'
- 'bioconductor-iranges >=2.6.1'
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