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Update rnastructure to 6.1. #11400

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Oct 18, 2018
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11 changes: 11 additions & 0 deletions recipes/rnastructure/build.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
#!/bin/sh
make all

mkdir -p $PREFIX/bin
mv ./exe/* $PREFIX/bin/

# Some of the tools inside the package require the information in /data_tables
# This makes them accessible from a relative path to the binaries.

mkdir -p $PREFIX/share/${PKG_NAME}/data_tables
mv ./data_tables/* $PREFIX/share/${PKG_NAME}/data_tables/
44 changes: 44 additions & 0 deletions recipes/rnastructure/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
about:
home: http://rna.urmc.rochester.edu/RNAstructure.html
license: GPLv2
license_family: GPL
license_file: gpl.txt
summary: 'RNAstructure is a complete package for RNA and DNA secondary structure prediction
and analysis. It includes algorithms for secondary structure prediction, including
facility to predict base pairing probabilities. It also can be used to predict
bimolecular structures and can predict the equilibrium binding affinity of an
oligonucleotide to a structured RNA target. This is useful for siRNA design.
It can also predict secondary structures common to two, unaligned sequences,
which is much more accurate than single sequence secondary structure prediction.
Finally, RNAstructure can take a number of different types of experiment mapping
data to constrain or restrain structure prediction. These include chemical mapping,
enzymatic mapping, NMR, and SHAPE data.'

build:
number: 0
skip: True # [osx]

package:
name: rnastructure
version: '6.1'

requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
run:

source:
sha256: b9a5468a53a6546bcc060d7befc9466a6688f1d1c2611707630d991c69193ed5
url: http://rna.urmc.rochester.edu/Releases/6.1/RNAstructureSource.tgz


# In version 6.0, several commands are returning exit code 1 when called with
# the -h option. Therefore, changed the modules that are tested.
test:
commands:
- bifold -h

extra:
identifiers:
- biotools:rnastructure