Metawrap preqs2

recipes/metabat2/build.sh

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+mkdir -p $PREFIX/bin/
+
+cp aggregateBinDepths.pl $PREFIX/bin/
+cp aggregateContigOverlapsByBin.pl $PREFIX/bin/
+cp contigOverlaps $PREFIX/bin/
+cp jgi_summarize_bam_contig_depths $PREFIX/bin/
+cp metabat $PREFIX/bin/
+cp metabat1 $PREFIX/bin/
+cp metabat2 $PREFIX/bin/
+cp runMetaBat.sh $PREFIX/bin/

recipes/metabat2/meta.yaml

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+{% set name = "metabat2" %}
+{% set version = "2.12.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://bitbucket.org/berkeleylab/metabat/downloads/metabat-static-binary-linux-x64_v{{ version }}.tar.gz
+  md5: 4c8345ba5b3023b7b4cd16b38bd70c64
+
+build:
+  number: 0
+  skip: True # [osx]
+
+requirements:
+  build: 
+
+  run:
+    - perl >=5
+
+test:
+  commands:
+    - metabat2 -h
+    - metabat1 -h
+    - jgi_summarize_bam_contig_depths -h
+    - contigOverlaps -h
+
+about:
+  home: https://bitbucket.org/berkeleylab/metabat
+  license: Academic and Research License
+  license_file: license.txt
+  summary: "MetaBAT2 is a program for binning metagenome-assembled contigs into bins/MAGs."
+
+

recipes/taxator-tk/build.sh

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+tar -xvf download*
+
+# copying over all necessary files
+mkdir -p $PREFIX/bin/
+mkdir -p $PREFIX/lib/
+mkdir -p $PREFIX/doc/
+
+cp taxator-tk_1.3.3e-64bit/bin/alignments-filter $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/binner $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/fasta-strip-identifier $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/last-merge-batches $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/last_maf_convert.py $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/lz4 $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/taxator $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/taxatortk.py $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/taxknife $PREFIX/bin/
+cp taxator-tk_1.3.3e-64bit/bin/taxsummary2krona $PREFIX/bin/
+
+cp taxator-tk_1.3.3e-64bit/lib/* $PREFIX/lib/
+
+

recipes/taxator-tk/meta.yaml

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+{% set name = "taxator-tk" %}
+{% set version = "1.3.3e" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://research.bifo.helmholtz-hzi.de/webapps/wa-download/download.php?id=v4Xdsvn6ib6AYQAyXmcTz6
+  md5: 6575138bb60503e9fdb76ff463be9df3
+
+build:
+  number: 0
+  skip: True # [osx]
+
+requirements:
+  build: 
+
+  run:
+    - boost 1.64.0 py27_4
+
+test:
+  commands:
+    - taxator -h
+
+about:
+  home: https://github.com/fungs/taxator-tk
+  license: GPLv3
+  license_file: taxator-tk_1.3.3e-64bit/doc/licenses/gpl-3.0.txt
+  summary: "Taxator-tk sequence taxonomic annotaion"
+
+