Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MEME: update to 5.0.2 + compile with mpi support #10914

Merged
merged 2 commits into from
Sep 12, 2018

Conversation

abretaud
Copy link
Member

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

@abretaud abretaud merged commit 9b1f3c6 into bioconda:master Sep 12, 2018
@james-chuang
Copy link
Contributor

In this update, many of the "support" tools (e.g. fasta-get-markov and meme2meme) from the MEME Suite are not added to $PATH by conda. I think this is because the executables for these scripts are now in /libexec, whereas they were in /bin in previous versions (4.x.x) of MEME Suite. My understanding is that /libexec is supposed to be for executables called by other programs and not by the end user (https://refspecs.linuxfoundation.org/FHS_3.0/fhs/ch04s07.html), hence why it's not added to $PATH. However, many of these clearly should be in $PATH as they were in previous versions of MEME. Is there some way to resolve this?

@abretaud abretaud mentioned this pull request Oct 17, 2018
5 tasks
@abretaud
Copy link
Member Author

Thanks for reporting the problem @james-chuang, I've made #11379 which should fix the problem

@james-chuang
Copy link
Contributor

Great, thanks for the quick fix!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants