Add recipe for longcallr_nn (#51355)

* Add recipe for longcallr_nn * clean up pip install command --------- Co-authored-by: Joshua Zhuang <[email protected]>
bioconda · Oct 14, 2024 · fdbcbe8 · fdbcbe8
1 parent 4e78097
commit fdbcbe8
Showing 1 changed file with 51 additions and 0 deletions.
diff --git a/recipes/longcallr_nn/meta.yaml b/recipes/longcallr_nn/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "longcallr_nn" %}
+{% set version = "0.0.1" %}
+{% set hash = "294155357b7165b127fc821b06dcdbeee28c108a0caf442b28992a5a5cc3e583" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/huangnengCSU/longcallR-nn/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: {{ hash }}
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - longcallR_nn=longcallR_nn.longcallR_nn:main
+  script:
+    - {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - python 3.9.*
+  run:
+    - python 3.9.*
+    - numpy 1.21.0
+    - pyyaml
+    - pysam
+    - tensorboardX
+    - pytorch 1.13.*
+    - torchvision
+    - torchmetrics
+
+test:
+  commands:
+    - longcallR_nn --help
+
+about:
+  home: "https://github.com/huangnengCSU/longcallR-nn"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model."
+  dev_url: "https://github.com/huangnengCSU/longcallR-nn"
+
+extra:
+  recipe-maintainers:
+    - huangnengCSU