Igv fix (#13414)

* [*] I have read the [guidelines for bioconda recipes](https://bioconda.github.io/guidelines.html).
* [ ] This PR adds a new recipe.
* [*] AFAIK, this recipe **is directly relevant to the biological sciences** (otherwise, please submit to the more general purpose [conda-forge channel](https://conda-forge.org/docs/)).
* [*] This PR updates an existing recipe.
* [*] This PR does something else (explain below).
Updated igv to newest version, fixed broken linkt to jar file, added test

recipes/igv/build.sh

@@ -1,5 +1,8 @@
 #!/bin/bash
 
-cp lib/*.jar $PREFIX/bin
-cp igv.sh $PREFIX/bin/igv
-chmod +x $PREFIX/bin/igv
+mkdir -p ${PREFIX}/lib
+mkdir -p ${PREFIX}/lib/igv
+cp lib/*.jar $PREFIX/lib/igv
+sed -i.bak 's|"$prefix"/lib/igv.jar|'"${PREFIX}"'/lib/igv/igv.jar|g' igv.sh
+cp igv.sh ${PREFIX}/bin/igv
+chmod +x ${PREFIX}/bin/igv

recipes/igv/meta.yaml

@@ -1,5 +1,5 @@
-{% set version = "2.4.16" %}
-{% set sha256 = "c1d6bc149876cc3e89dbde5ed8c2f2329a661ead30c0a6ba09fce9c33f10542f" %}
+{% set version = "2.4.17" %}
+{% set sha256 = "d99600ed09bf71e4347df3cb02a8a91db008a6bca629060080947ae84306f40b" %}
 
 package:
   name: igv
@@ -19,7 +19,7 @@ requirements:
 
 test:
   commands:
-#    - "igv > log.txt 2>&1 & PID=$! && sleep 2 && kill $PID && grep 'IGV Version {{ version }}' log.txt"
+    - igv --version| grep {{ version }}
 
 about:
   home: "http://www.broadinstitute.org/software/igv/home"