clean up recipe

bioconda · Oct 11, 2024 · e9716b7 · e9716b7
1 parent f017fab
commit e9716b7
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Showing 2 changed files with 14 additions and 8 deletions.
diff --git a/recipes/rna-seqc/build.sh b/recipes/rna-seqc/build.sh
@@ -1,7 +1,8 @@
 #!/bin/bash
 set -eu -o pipefail
 
-export CFLAGS="${CFLAGS} -fcommon"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CFLAGS="${CFLAGS} -O3 -fcommon"
 
 cd rnaseqc
 pushd SeqLib/bwa
@@ -19,7 +20,7 @@ popd
 
 make \
     CC="$CXX" \
-    CPPFLAGS="-I$PREFIX/include -fcommon" \
+    CPPFLAGS="${CPPFLAGS} -O3 -I$PREFIX/include -fcommon" \
     SeqLib/lib/libseqlib.a
 
 make \
@@ -28,4 +29,5 @@ make \
     LIBRARY_PATHS="-L$PREFIX/lib -Wl,-rpath $PREFIX/lib"
 
 mkdir -p $PREFIX/bin
+chmod 0755 rnaseqc
 cp rnaseqc $PREFIX/bin
diff --git a/recipes/rna-seqc/meta.yaml b/recipes/rna-seqc/meta.yaml
@@ -27,19 +27,23 @@ requirements:
     - zlib
   run:
     - curl
-    - bzip2
     - boost-cpp
-    - xz
-    - zlib
+
 test:
   commands:
     - rnaseqc --version
 
 about:
-  home: https://github.com/broadinstitute/rnaseqc
+  home: "https://github.com/broadinstitute/rnaseqc"
   license_url: https://raw.githubusercontent.com/broadinstitute/rnaseqc/master/LICENSE
   license_file: rnaseqc/LICENSE
-  license: BSD 3-clause
+  license: "BSD-3-Clause"
   license_family: BSD
-  summary: Fast, efficient RNA-Seq metrics for quality control and process optimization
+  summary: "Fast, efficient RNA-Seq metrics for quality control and process optimization."
+  dev_url: "https://github.com/broadinstitute/rnaseqc"
+  doc_url: "https://github.com/getzlab/rnaseqc/blob/v{{ version }}/README.md"
 
+extra:
+  identifiers:
+    - biotools:rna-seqc
+    - doi:10.1093/bioinformatics/btab135