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* Add r-htssip * converted r- to bioconductor- * trivial change to restart checks
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#!/bin/bash | ||
if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then | ||
export DISABLE_AUTOBREW=1 | ||
$R CMD INSTALL --build . | ||
else | ||
mkdir -p $PREFIX/lib/R/library/HTSSIP | ||
mv * $PREFIX/lib/R/library/HTSSIP | ||
fi |
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{% set version = '1.4.0' %} | ||
{% set posix = '' %} | ||
{% set native = '' %} | ||
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package: | ||
name: r-htssip | ||
version: {{ version|replace("-", "_") }} | ||
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source: | ||
url: {{ cran_mirror }}/src/contrib/HTSSIP_{{ version }}.tar.gz | ||
sha256: db93fe66ac3cbde74816cd4c1354e450b398f190fb291b9369b2e753e2e28e13 | ||
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build: | ||
number: 0 | ||
rpaths: | ||
- lib/R/lib/ | ||
- lib/ | ||
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requirements: | ||
build: | ||
host: | ||
- r-base | ||
- bioconductor-deseq2 >=1.16.1 | ||
- r-ape >=4.1 | ||
- r-coenocliner >=0.2.2 | ||
- r-dplyr >=0.7.4 | ||
- r-ggplot2 >=2.2.1 | ||
- r-igraph >=1.1.2 | ||
- r-lazyeval >=0.2.0 | ||
- r-magrittr >=1.5 | ||
- bioconductor-phyloseq >=1.20.0 | ||
- r-plyr >=1.8.4 | ||
- r-stringr >=1.2.0 | ||
- r-tidyr >=0.7.2 | ||
- r-vegan >=2.4.0 | ||
run: | ||
- r-base | ||
- bioconductor-deseq2 >=1.16.1 | ||
- r-ape >=4.1 | ||
- r-coenocliner >=0.2.2 | ||
- r-dplyr >=0.7.4 | ||
- r-ggplot2 >=2.2.1 | ||
- r-igraph >=1.1.2 | ||
- r-lazyeval >=0.2.0 | ||
- r-magrittr >=1.5 | ||
- bioconductor-phyloseq >=1.20.0 | ||
- r-plyr >=1.8.4 | ||
- r-stringr >=1.2.0 | ||
- r-tidyr >=0.7.2 | ||
- r-vegan >=2.4.0 | ||
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test: | ||
commands: | ||
- $R -e "library('HTSSIP')" | ||
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about: | ||
home: https://CRAN.R-project.org/package=HTSSIP | ||
license: GPL-2 | ||
summary: 'Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) | ||
data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window | ||
high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope | ||
probing (q-SIP).' | ||
license_family: GPL2 | ||
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' | ||
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extra: | ||
recipe-maintainers: | ||
- nick-youngblut |