Skip to content

Commit

Permalink
Add r-htssip (#10121)
Browse files Browse the repository at this point in the history
* Add r-htssip

* converted r- to bioconductor-

* trivial change to restart checks
  • Loading branch information
nick-youngblut authored Jul 30, 2018
1 parent 6cccf71 commit db9ec58
Show file tree
Hide file tree
Showing 2 changed files with 76 additions and 0 deletions.
8 changes: 8 additions & 0 deletions recipes/r-htssip/build.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
#!/bin/bash
if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then
export DISABLE_AUTOBREW=1
$R CMD INSTALL --build .
else
mkdir -p $PREFIX/lib/R/library/HTSSIP
mv * $PREFIX/lib/R/library/HTSSIP
fi
68 changes: 68 additions & 0 deletions recipes/r-htssip/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
{% set version = '1.4.0' %}
{% set posix = '' %}
{% set native = '' %}

package:
name: r-htssip
version: {{ version|replace("-", "_") }}

source:
url: {{ cran_mirror }}/src/contrib/HTSSIP_{{ version }}.tar.gz
sha256: db93fe66ac3cbde74816cd4c1354e450b398f190fb291b9369b2e753e2e28e13

build:
number: 0
rpaths:
- lib/R/lib/
- lib/

requirements:
build:
host:
- r-base
- bioconductor-deseq2 >=1.16.1
- r-ape >=4.1
- r-coenocliner >=0.2.2
- r-dplyr >=0.7.4
- r-ggplot2 >=2.2.1
- r-igraph >=1.1.2
- r-lazyeval >=0.2.0
- r-magrittr >=1.5
- bioconductor-phyloseq >=1.20.0
- r-plyr >=1.8.4
- r-stringr >=1.2.0
- r-tidyr >=0.7.2
- r-vegan >=2.4.0
run:
- r-base
- bioconductor-deseq2 >=1.16.1
- r-ape >=4.1
- r-coenocliner >=0.2.2
- r-dplyr >=0.7.4
- r-ggplot2 >=2.2.1
- r-igraph >=1.1.2
- r-lazyeval >=0.2.0
- r-magrittr >=1.5
- bioconductor-phyloseq >=1.20.0
- r-plyr >=1.8.4
- r-stringr >=1.2.0
- r-tidyr >=0.7.2
- r-vegan >=2.4.0

test:
commands:
- $R -e "library('HTSSIP')"

about:
home: https://CRAN.R-project.org/package=HTSSIP
license: GPL-2
summary: 'Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP)
data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window
high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope
probing (q-SIP).'
license_family: GPL2
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'

extra:
recipe-maintainers:
- nick-youngblut

0 comments on commit db9ec58

Please sign in to comment.