Update zol to 1.5.0 (#51673)

* Update zol to 1.5.0 * Update meta.yaml * Update build.sh --------- Co-authored-by: Rauf Salamzade <[email protected]>
bioconda · Oct 25, 2024 · d792d8e · d792d8e
1 parent 0a8cdfb
commit d792d8e
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Showing 2 changed files with 8 additions and 16 deletions.
diff --git a/recipes/zol/build.sh b/recipes/zol/build.sh
@@ -4,20 +4,10 @@ $PYTHON -m pip install . --ignore-installed --no-deps -vv
 
 mkdir -p ${PREFIX}/bin
 
-# (re)-compile RBH/InParanoid-esque programs written in C++
-${CXX} -std=c++11 -o zol/orthologs/runRBH zol/orthologs/runRBH.cpp
-${CXX} -std=c++11 -o zol/orthologs/splitDiamondResults zol/orthologs/splitDiamondResults.cpp
-${CXX} -std=c++11 -o zol/splitDiamondResultsForFai zol/splitDiamondResultsForFai.cpp
-
-cp zol/orthologs/runRBH ${PREFIX}/bin/
-cp zol/orthologs/splitDiamondResults ${PREFIX}/bin/
-cp zol/splitDiamondResultsForFai ${PREFIX}/bin/
-cp zol/clusterHeatmap.R ${PREFIX}/bin/
-cp zol/plotTinyAAI.R ${PREFIX}/bin/
-cp zol/plotSegments.R ${PREFIX}/bin/
-cp zol/njTree.R ${PREFIX}/bin/
-cp zol/phyloHeatmap.R ${PREFIX}/bin/
-cp zol/salt_gc_vs_ribo_aai.R ${PREFIX}/bin/
+export LDFLAGS=
+${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/runRBH src/zol/orthologs/runRBH.cpp
+${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/splitDiamondResults src/zol/orthologs/splitDiamondResults.cpp
+${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/splitDiamondResultsForFai src/zol/splitDiamondResultsForFai.cpp
 
 chmod +x ${PREFIX}/bin/runRBH
 chmod +x ${PREFIX}/bin/splitDiamondResults

diff --git a/recipes/zol/meta.yaml b/recipes/zol/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "zol" %}
-{% set version = "1.4.12" %}
+{% set version = "1.5.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/Kalan-Lab/zol/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: cb02a98c7257a9d7ef089bc585637aa9ee5671c6b3a65dbaed6c0dd2331b651b
+  sha256: e1d0d090a08a26d2ecbb958d398dc47df94ffbaa034265086c7084d1e88cfb2d
 
 build:
   number: 0
@@ -56,6 +56,8 @@ requirements:
     - bioconductor-ggtree
     - ete3
     - codoff
+    - gravis
+    - colour
 
 test:
   commands: