fixes #10336 (#10337)

* fixes 10336 * increase build number and add test
bioconda · Aug 8, 2018 · d26a9a7 · d26a9a7
1 parent a2ac14c
commit d26a9a7
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diff --git a/recipes/lumpy-sv/build.sh b/recipes/lumpy-sv/build.sh
@@ -19,6 +19,7 @@ cp scripts/lumpyexpress $PREFIX/bin
 
 cp scripts/cnvanator_to_bedpes.py $PREFIX/bin
 
+
 cp scripts/*.py $outdir/scripts
 cp scripts/*.sh $outdir/scripts
 cp scripts/*.pl $outdir/scripts
@@ -28,3 +29,6 @@ cp scripts/bamkit/* $outdir/scripts/bamkit
 
 cp $RECIPE_DIR/lumpyexpress.config $outdir
 ln -s $outdir/lumpyexpress.config $PREFIX/bin
+ln -s $outdir/extractSplitReads_BwaMem /$PREFIX/bin
+
+chmod +x $PREFIX/bin/extractSplitReads_BwaMem
diff --git a/recipes/lumpy-sv/meta.yaml b/recipes/lumpy-sv/meta.yaml
@@ -10,7 +10,7 @@ source:
   #sha256: 1a7a5d18875b297acaa68ee1e864ca048654ebc85348920b518dc689d2b7a3cf
 
 build:
-  number: 2
+  number: 3
   skip: True # [not py27]
 
 requirements:
@@ -36,6 +36,7 @@ test:
     - 'lumpy 2>&1 | grep -q structural'
     - 'lumpy_filter 2>&1 | grep -q lumpy_filter\:\ usage'
     - 'lumpyexpress 2>&1 | grep -q lumpyexpress'
+    - extractSplitReads_BwaMem --help
 
 about:
   home: https://github.com/arq5x/lumpy-sv