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Update PhaBOX to 2.1.2 version and add new requirements
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{% set name = "PhaBOX" %} | ||
{% set version = "2.1.0" %} | ||
{% set version = "2.1.2" %} | ||
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package: | ||
name: "{{ name|lower }}" | ||
version: "{{ version }}" | ||
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source: | ||
url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/{{ version }}.tar.gz | ||
sha256: 0ffe4da03ccc2aac77c17866033ce513f72a5ecdf9df108abbcdbfced438b04c | ||
url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz | ||
sha256: d23a9d0bd68c49e8729ae893a7436f2b907e745637450b3a473c3a88762dab75 | ||
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build: | ||
number: 0 | ||
noarch: python | ||
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv" | ||
entry_points: | ||
- phabox2 = phabox2.phabox2:main | ||
run_exports: | ||
- {{ pin_subpackage('phabox', max_pin="x.x") }} | ||
- phabox2=phabox2.phabox2:main | ||
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requirements: | ||
host: | ||
- pip | ||
- python >=3.8 | ||
- python | ||
- setuptools | ||
run: | ||
- python >=3.8 | ||
- biopython >=1.84 | ||
- datasets >=3 | ||
- kcounter >=0.1.1 | ||
- fasttree >=2.1.11 | ||
- mafft >=7.525 | ||
- networkx >=3.4 | ||
- numpy >=1.26 | ||
- pandas >=2 | ||
- prodigal-gv >=2.11.0 | ||
- pyarrow >=16 | ||
- pytorch >=2.4 | ||
- scipy >=1.14 | ||
- seaborn-base >=0.13.2 | ||
- transformers >=4 | ||
- python =3.10.14 | ||
- diamond =0.9.14 | ||
- blast =2.16.0 | ||
- mcl =22.282 | ||
- fasttree =2.1.11 | ||
- kcounter =0.1.1 | ||
- mafft =7.525 | ||
- numpy =1.26.4 | ||
- pandas =2.2.3 | ||
- networkx =3.4.2 | ||
- seaborn-base =0.13.2 | ||
- biopython =1.84 | ||
- tqdm =4.66.5 | ||
- scipy =1.14.1 | ||
- datasets | ||
- transformers | ||
- pytorch | ||
- triton | ||
- accelerate | ||
- prodigal-gv | ||
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test: | ||
commands: | ||
- phabox2 --help | ||
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about: | ||
home: "https://phage.ee.cityu.edu.hk" | ||
home: https://github.com/KennthShang/PhaBOX | ||
license: "AFL-3.0" | ||
license_family: OTHER | ||
license_file: "LICENSE.md" | ||
summary: "Phage BOX is a Python library for phage-related tasks." | ||
summary: Virus identification and analysis tool set | ||
dev_url: "https://github.com/KennthShang/PhaBOX" | ||
doc_url: "https://github.com/KennthShang/PhaBOX/wiki" | ||
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extra: | ||
recipe-maintainers: | ||
- bernt-matthias | ||
- SHANG Jiayu | ||
- PENG Cheng | ||
identifiers: | ||
- doi:10.1093/bioadv/vbad101 | ||
- biotools:phabox | ||
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channels: | ||
- bioconda | ||
- conda-forge | ||
- defaults |