Update paragraph to 2.3 (#16539)

Package uploads complete: [ci skip] - biocontainers/paragraph:2.3--h8908b6f_0 - linux-64/paragraph-2.3-h8908b6f_0.tar.bz2 Co-authored-by: dpryan79 <[email protected]> Co-authored-by: Devon Ryan <[email protected]>
bioconda · Aug 29, 2019 · c633590 · c633590
1 parent 6e9a052
commit c633590
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Showing 2 changed files with 7 additions and 8 deletions.
diff --git a/recipes/paragraph/build.sh b/recipes/paragraph/build.sh
@@ -5,10 +5,11 @@ sed -i.bak "s/-Werror //" src/cmake/cxx.cmake
 
 # external htslib.a means we need -lz and co
 sed -i.bak "s/\${LIBLZMA_LIBRARIES}/\${LIBLZMA_LIBRARIES} \${LIBBZIP2_LIBRARIES} \${LIBZLIB_LIBRARIES}/;s/libhts.a/libhts.so/" src/cmake/GetHtslib.cmake
+sed -i.bak "53d" CMakeLists.txt
 
 mkdir build
 pushd build
 export HTSLIB_INSTALL_PATH=${PREFIX}
-cmake ../ -DCMAKE_CXX_COMPILER=${CXX} -DCMAKE_C_COMPILER=${CC} -DBOOST_ROOT=${PREFIX} -DCMAKE_INSTALL_PREFIX=${PREFIX} -DHTSLIB_INSTALL_PATH=${PREFIX} -DCMAKE_CXX_FLAGS="${CXXFLAGS} -Wno-deprecated-declarations"
+cmake ../ -DCMAKE_CXX_COMPILER=${CXX} -DCMAKE_C_COMPILER=${CC} -DBOOST_ROOT=${BUILD_PREFIX} -DCMAKE_INSTALL_PREFIX=${PREFIX} -DHTSLIB_INSTALL_PATH=${PREFIX} -DCMAKE_CXX_FLAGS="${CXXFLAGS} -Wno-deprecated-declarations"
 make 
 make install
diff --git a/recipes/paragraph/meta.yaml b/recipes/paragraph/meta.yaml
@@ -1,32 +1,30 @@
 {% set name = "paragraph" %}
-{% set version = "2.2b" %}
+{% set version = "2.3" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
   url: https://github.com/Illumina/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 9ee8f566c1c8159e3ec850dd682739c9913e540a66d9dd610e0cfc51a526bddc
+  sha256: 6394314e42005026893a305362a1fed58d37f2ca02ed5fc6c54d4c5d12caf1eb
 
 build:
-  skip: True  # [py27 or osx]
+  skip: True  # [osx]
   number: 0
 
 requirements:
   build:
     - "{{ compiler('c') }}"
     - "{{ compiler('cxx') }}"
     - cmake
-  host:
-    - python
     - boost-cpp
-    - boost
+  host:
     - htslib
     - zlib
     - bzip2
   run:
-    - python
+    - python >=3
     - htslib
     - zlib
     - bzip2