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Update fastq-dl to 3.0.0 (#51506)
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* Update fastq-dl to 3.0.0

* Update `fastq-dl` recipe

* Add non-Python dependencies

* update depends, exclude depends of depends

* add to maintainers

* Update meta.yaml

---------

Co-authored-by: Antônio Camargo <[email protected]>
Co-authored-by: Robert A. Petit III <[email protected]>
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3 people authored Oct 21, 2024
1 parent 53390d6 commit c248b98
Showing 1 changed file with 15 additions and 9 deletions.
24 changes: 15 additions & 9 deletions recipes/fastq-dl/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,30 +1,32 @@
{% set version = "2.0.4" %}
{% set name = "fastq-dl" %}
{% set version = "3.0.0" %}

package:
name: fastq-dl
name: {{ name }}
version: {{ version }}

source:
url: https://pypi.io/packages/source/f/fastq_dl/fastq_dl-{{ version }}.tar.gz
sha256: 201a75f7e7b08d1eb56c625c98f92ad39e9e683e1921bb60a24a38a158a2daa8
sha256: de85e3fcc60c2f2fb9313336df9706add440b0f89963f28a46fa75e5ff041a0a

build:
number: 0
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
entry_points:
- fastq-dl = fastq_dl.fastq_dl:main
script: "{{ PYTHON }} -m pip install . -vv"
- fastq-dl = fastq_dl.cli.download:main
run_exports:
- {{ pin_subpackage(name, max_pin="x.x") }}

requirements:
host:
- python >=3.7
- poetry =1.3
- python >=3.9
- poetry-core
- pip

run:
- executor
- pigz
- python >=3.7
- python >=3.9
- pysradb >=1.4
- requests
- rich-click >=1.6.0
Expand All @@ -43,3 +45,7 @@ about:
license: MIT
license_file: LICENSE
summary: A tool to download FASTQs associated with Study, Experiment, or Run accessions.

extra:
recipe-maintainers:
- rpetit3

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