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bwise integration to bioconda
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Malfoy committed Dec 2, 2018
1 parent ea4365d commit bf50dce
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14 changes: 14 additions & 0 deletions recipes/bwise/build.sh
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#!/bin/bash

cd src;
make;


mkdir -p $PREFIX/bin;
cp src/path_counter Bwise_path_counter;
cp src/path_to_kmer Bwise_path_to_kmer;
cp src/maximal_sr Bwise_maximal_sr;
cp src/K2000/K2000.py Bwise_K2000.py;
cp src/K2000/K2000_msr_to_gfa.py Bwise_K2000_msr_to_gfa.py;
cp src/K2000/K2000_gfa_to_fasta.py Bwise_K2000_gfa_to_fasta.py;
cp src/Bwise_conda $PREFIX/bin/bwise;
36 changes: 36 additions & 0 deletions recipes/bwise/meta.yaml
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{% set version = "1.0.0" %}


package:
name: bcool
version: '{{version}}'

source:
url: "https://github.com/Malfoy/BWISE/archive/1.0.0.zip"
sha256: 5771093a719f437176dd4a866e10fefa1a33154792a29b270cb69049117106b8

build:
number: 0
skip: true # [osx]
skip: True # [py27]

requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
run:
- python
- bgreat
- ntcard
- bcalm
- btrim


test:
commands:
- bwise

about:
home: https://github.com/Malfoy/BWISE
license: AGPL-3.0
summary: BWISE is a de Bruijn assembly Workflow using Integral information of Short paired-End reads

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