Skip to content

Commit

Permalink
Pinning updates for bamtools and seqtk. Update blacklist to… (#13483)
Browse files Browse the repository at this point in the history
* Pinning updates for bamtools, bowtie1, and seqtk. Update blacklist to exclude presumably unused versions of said tools in the future

* bowtie

* add tbb-devel

* bowtie1 has code issues, I'm not going to bother
  • Loading branch information
dpryan79 authored Feb 4, 2019
1 parent 568b7df commit b9561ff
Show file tree
Hide file tree
Showing 4 changed files with 8 additions and 3 deletions.
1 change: 0 additions & 1 deletion .circleci/setup.sh
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,6 @@ if ! type bioconda-utils 2> /dev/null || [[ $BOOTSTRAP == "true" ]]; then
$WORKSPACE/miniconda/bin/conda config --system --add channels defaults
$WORKSPACE/miniconda/bin/conda config --system --add channels bioconda
$WORKSPACE/miniconda/bin/conda config --system --add channels conda-forge
$WORKSPACE/miniconda/bin/conda config --system --add channels conda-forge/label/cf201901

# step 3: install bioconda-utils
$WORKSPACE/miniconda/bin/conda install -y git pip --file https://raw.githubusercontent.com/bioconda/bioconda-utils/$BIOCONDA_UTILS_TAG/bioconda_utils/bioconda_utils-requirements.txt
Expand Down
6 changes: 6 additions & 0 deletions build-fail-blacklist
Original file line number Diff line number Diff line change
@@ -1,5 +1,11 @@
# Unclear that the following old versions are still needed
recipes/hmmer/2.3.2
recipes/bamtools/2.3.0
recipes/bowtie/1.1.1
recipes/fastqc/0.10.1
recipes/fastqc/0.11.2
recipes/fastqc/0.11.3
recipes/fastqc/0.11.6

# The build string needs to be modified to account for the [nocairo] feature
recipes/genometools-genometools/1.5.10-nocairo
Expand Down
2 changes: 1 addition & 1 deletion recipes/bamtools/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ source:
sha256: '{{sha256}}'

build:
number: 3
number: 4

requirements:
build:
Expand Down
2 changes: 1 addition & 1 deletion recipes/seqtk/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
sha256: {{ sha256 }}

build:
number: 0
number: 1

requirements:
build:
Expand Down

0 comments on commit b9561ff

Please sign in to comment.