Add fc-virus recipe (#51809)

* Create meta.yaml * Update meta.yaml * Update meta.yaml * Create LICENSE * Create build.sh * Update meta.yaml * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update meta.yaml * Update build.sh * Delete recipes/fc/build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Create build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Update build.sh * Update build.sh * Update meta.yaml * Update build.sh * Update meta.yaml * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update meta.yaml * Update build.sh * Update meta.yaml * Update meta.yaml * Update build.sh * Update meta.yaml * Update recipes/fc/meta.yaml Co-authored-by: Björn Grüning <[email protected]> * Update meta.yaml * Update meta.yaml * Update build.sh * Update meta.yaml * try fc * edit source URL * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Delete recipes/fc/LICENSE --------- Co-authored-by: Björn Grüning <[email protected]> Co-authored-by: Joshua Zhuang <[email protected]>
bioconda · Nov 5, 2024 · b623d5b · b623d5b
1 parent dc35ae7
commit b623d5b
Show file tree

Hide file tree

Showing 2 changed files with 44 additions and 0 deletions.
diff --git a/recipes/fc/build.sh b/recipes/fc/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+set -xe
+make CXX="${CXX}" INCLUDES="-I$PREFIX/include" CFLAGS+="${CFLAGS} -g -Wall -O2 -L$PREFIX/lib"
+#chmod +x ./bin/fc-virus
+chmod 777 ./bin/fc-virus
+mkdir -p ${PREFIX}/bin
+cp -f ./bin/fc-virus ${PREFIX}/bin
diff --git a/recipes/fc/meta.yaml b/recipes/fc/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "fc" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: "https://github.com/qdu-bioinfo/fc-virus/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: "0f3b5f76ca17c90c7553d35280de6c0248802fad088a7fe653652653e3170944"
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("fc", max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+    - boost-cpp
+
+test:
+  commands:
+    - fc-virus --help
+
+about:
+  home: "https://github.com/qdu-bioinfo/fc-virus"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Accurate Assembly of Full-length Consensus for Viral Quasispecies."
+  dev_url: "https://github.com/qdu-bioinfo/fc-virus"