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Add bioconductor-rnaseqsamplesize (#11559)
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* Add bioconductor-rnaseqsamplesize

* Update recipe

* Fixing some URLs

* Update dependencies missing
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apeltzer authored and karel-brinda committed Oct 31, 2018
1 parent 4b17f7f commit 8a2cff5
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4 changes: 4 additions & 0 deletions recipes/bioconductor-rnaseqsamplesize/build.sh
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#!/bin/bash
mv DESCRIPTION DESCRIPTION.old
grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
$R CMD INSTALL --build .
42 changes: 42 additions & 0 deletions recipes/bioconductor-rnaseqsamplesize/meta.yaml
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{% set version = "1.12.0" %}
{% set name = "RnaSeqSampleSize" %}
{% set bioc = "3.6" %}

package:
name: 'bioconductor-{{ name|lower }}'
version: '{{ version }}'
source:
url:
- 'https://bioconductor.org/packages/release/bioc/src/contrib/RnaSeqSampleSize_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
sha256: 60a3afc79a4ca2531adab6ea712a6ff6d5336ac24205036ffabfe8124a8b6202
build:
number: 2
rpaths:
- lib/R/lib/
- lib/
requirements:
host:
- bioconductor-edgeR
- bioconductor-rnaseqsamplesizedata
- bioconductor-biomart
- r-heatmap3
- r-matlab
- bioconductor-keggrest
- r-base
run:
- bioconductor-edgeR
- bioconductor-rnaseqsamplesizedata
- bioconductor-biomart
- r-heatmap3
- r-matlab
- bioconductor-keggrest
- r-base
test:
commands:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'GPL-2'
summary: 'RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data.'

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