[BULK] Many R 3.5 only packages (#11410)

bioconda · Oct 19, 2018 · 7d00675 · 7d00675
1 parent 689ff5d
commit 7d00675
Show file tree

Hide file tree

Showing 89 changed files with 178 additions and 178 deletions.
diff --git a/recipes/bioconductor-affy/meta.yaml b/recipes/bioconductor-affy/meta.yaml
@@ -24,15 +24,15 @@ requirements:
     - 'bioconductor-biocinstaller >=1.30.0,<1.32.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-zlibbioc >=1.26.0,<1.28.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affyio >=1.50.0,<1.52.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-biocgenerics >=0.26.0,<0.28.0'
     - 'bioconductor-biocinstaller >=1.30.0,<1.32.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-zlibbioc >=1.26.0,<1.28.0'
-    - r-base
+    - r-base >=3.5
   build:
     - {{ compiler('c') }}
     - automake

diff --git a/recipes/bioconductor-affycontam/meta.yaml b/recipes/bioconductor-affycontam/meta.yaml
@@ -21,12 +21,12 @@ requirements:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-affydata >=1.28.0,<1.30.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-affydata >=1.28.0,<1.30.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-affycoretools/meta.yaml b/recipes/bioconductor-affycoretools/meta.yaml
@@ -29,7 +29,7 @@ requirements:
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-reportingtools >=2.20.0,<2.22.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-ggplot2
     - r-gplots
@@ -49,7 +49,7 @@ requirements:
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-reportingtools >=2.20.0,<2.22.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-ggplot2
     - r-gplots

diff --git a/recipes/bioconductor-affydata/meta.yaml b/recipes/bioconductor-affydata/meta.yaml
@@ -19,10 +19,10 @@ build:
 requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
     - wget
 test:
   commands:

diff --git a/recipes/bioconductor-affyexpress/meta.yaml b/recipes/bioconductor-affyexpress/meta.yaml
@@ -20,11 +20,11 @@ requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-affyilm/meta.yaml b/recipes/bioconductor-affyilm/meta.yaml
@@ -22,13 +22,13 @@ requirements:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-gcrma >=2.52.0,<2.54.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affxparser >=1.52.0,<1.54.0'
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-gcrma >=2.52.0,<2.54.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-affypdnn/meta.yaml b/recipes/bioconductor-affypdnn/meta.yaml
@@ -19,10 +19,10 @@ build:
 requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-affyplm/meta.yaml b/recipes/bioconductor-affyplm/meta.yaml
@@ -24,15 +24,15 @@ requirements:
     - 'bioconductor-gcrma >=2.52.0,<2.54.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-zlibbioc >=1.26.0,<1.28.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-biocgenerics >=0.26.0,<0.28.0'
     - 'bioconductor-gcrma >=2.52.0,<2.54.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-zlibbioc >=1.26.0,<1.28.0'
-    - r-base
+    - r-base >=3.5
   build:
     - {{ compiler('c') }}
     - make

diff --git a/recipes/bioconductor-affyrnadegradation/meta.yaml b/recipes/bioconductor-affyrnadegradation/meta.yaml
@@ -19,10 +19,10 @@ build:
 requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-altcdfenvs/meta.yaml b/recipes/bioconductor-altcdfenvs/meta.yaml
@@ -25,7 +25,7 @@ requirements:
     - 'bioconductor-hypergraph >=1.52.0,<1.54.0'
     - 'bioconductor-makecdfenv >=1.56.0,<1.58.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
@@ -34,7 +34,7 @@ requirements:
     - 'bioconductor-hypergraph >=1.52.0,<1.54.0'
     - 'bioconductor-makecdfenv >=1.56.0,<1.58.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-annotationhub/meta.yaml b/recipes/bioconductor-annotationhub/meta.yaml
@@ -23,7 +23,7 @@ requirements:
     - 'bioconductor-biocinstaller >=1.30.0,<1.32.0'
     - 'bioconductor-interactivedisplaybase >=1.18.0,<1.20.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-curl
     - r-httr
     - r-rsqlite
@@ -34,7 +34,7 @@ requirements:
     - 'bioconductor-biocinstaller >=1.30.0,<1.32.0'
     - 'bioconductor-interactivedisplaybase >=1.18.0,<1.20.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-curl
     - r-httr
     - r-rsqlite

diff --git a/recipes/bioconductor-annotationhubdata/meta.yaml b/recipes/bioconductor-annotationhubdata/meta.yaml
@@ -36,7 +36,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-rtracklayer >=1.40.6,<1.42.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - 'r-futile.logger >=1.3.0'
     - r-jsonlite
@@ -62,7 +62,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-rtracklayer >=1.40.6,<1.42.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - 'r-futile.logger >=1.3.0'
     - r-jsonlite

diff --git a/recipes/bioconductor-arrayqualitymetrics/meta.yaml b/recipes/bioconductor-arrayqualitymetrics/meta.yaml
@@ -25,7 +25,7 @@ requirements:
     - 'bioconductor-genefilter >=1.62.0,<1.64.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
     - 'bioconductor-vsn >=3.48.1,<3.50.0'
-    - r-base
+    - r-base >=3.5
     - 'r-cairo >=1.4-6'
     - 'r-gridsvg >=1.4-3'
     - r-hmisc
@@ -43,7 +43,7 @@ requirements:
     - 'bioconductor-genefilter >=1.62.0,<1.64.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
     - 'bioconductor-vsn >=3.48.1,<3.50.0'
-    - r-base
+    - r-base >=3.5
     - 'r-cairo >=1.4-6'
     - 'r-gridsvg >=1.4-3'
     - r-hmisc

diff --git a/recipes/bioconductor-arraytools/meta.yaml b/recipes/bioconductor-arraytools/meta.yaml
@@ -21,13 +21,13 @@ requirements:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
     - r-xtable
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
     - r-xtable
 test:
   commands:

diff --git a/recipes/bioconductor-atacseqqc/meta.yaml b/recipes/bioconductor-atacseqqc/meta.yaml
@@ -32,7 +32,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-rtracklayer >=1.40.6,<1.42.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-kernsmooth
     - r-preseqr
     - r-randomforest
@@ -51,7 +51,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-rtracklayer >=1.40.6,<1.42.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - r-kernsmooth
     - r-preseqr
     - r-randomforest

diff --git a/recipes/bioconductor-cellhts2/meta.yaml b/recipes/bioconductor-cellhts2/meta.yaml
@@ -26,7 +26,7 @@ requirements:
     - 'bioconductor-prada >=1.56.0,<1.58.0'
     - 'bioconductor-splots >=1.46.0,<1.48.0'
     - 'bioconductor-vsn >=3.48.1,<3.50.0'
-    - r-base
+    - r-base >=3.5
     - r-hwriter
     - r-locfit
     - r-rcolorbrewer
@@ -39,7 +39,7 @@ requirements:
     - 'bioconductor-prada >=1.56.0,<1.58.0'
     - 'bioconductor-splots >=1.46.0,<1.48.0'
     - 'bioconductor-vsn >=3.48.1,<3.50.0'
-    - r-base
+    - r-base >=3.5
     - r-hwriter
     - r-locfit
     - r-rcolorbrewer

diff --git a/recipes/bioconductor-chippeakanno/meta.yaml b/recipes/bioconductor-chippeakanno/meta.yaml
@@ -41,7 +41,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
     - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-idr
     - r-matrixstats
@@ -71,7 +71,7 @@ requirements:
     - 'bioconductor-rsamtools >=1.32.3,<1.34.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
     - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-idr
     - r-matrixstats

diff --git a/recipes/bioconductor-chipxpress/meta.yaml b/recipes/bioconductor-chipxpress/meta.yaml
@@ -23,7 +23,7 @@ requirements:
     - 'bioconductor-chipxpressdata >=1.18.0,<1.20.0'
     - 'bioconductor-frma >=1.32.0,<1.34.0'
     - 'bioconductor-geoquery >=2.48.0,<2.50.0'
-    - r-base
+    - r-base >=3.5
     - r-biganalytics
     - r-bigmemory
   run:
@@ -32,7 +32,7 @@ requirements:
     - 'bioconductor-chipxpressdata >=1.18.0,<1.20.0'
     - 'bioconductor-frma >=1.32.0,<1.34.0'
     - 'bioconductor-geoquery >=2.48.0,<2.50.0'
-    - r-base
+    - r-base >=3.5
     - r-biganalytics
     - r-bigmemory
 test:

diff --git a/recipes/bioconductor-cn.farms/meta.yaml b/recipes/bioconductor-cn.farms/meta.yaml
@@ -24,7 +24,7 @@ requirements:
     - 'bioconductor-oligo >=1.44.0,<1.46.0'
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-ff
     - r-lattice
@@ -36,7 +36,7 @@ requirements:
     - 'bioconductor-oligo >=1.44.0,<1.46.0'
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
-    - r-base
+    - r-base >=3.5
     - r-dbi
     - r-ff
     - r-lattice

diff --git a/recipes/bioconductor-cormotif/meta.yaml b/recipes/bioconductor-cormotif/meta.yaml
@@ -20,11 +20,11 @@ requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-limma >=3.36.5,<3.38.0'
-    - r-base
+    - r-base >=3.5
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-crisprseekplus/meta.yaml b/recipes/bioconductor-crisprseekplus/meta.yaml
@@ -25,7 +25,7 @@ requirements:
     - 'bioconductor-genomicfeatures >=1.32.2,<1.34.0'
     - 'bioconductor-genomicranges >=1.32.7,<1.34.0'
     - 'bioconductor-guideseq >=1.10.0,<1.12.0'
-    - r-base
+    - r-base >=3.5
     - r-dt
     - r-hash
     - r-shiny
@@ -38,7 +38,7 @@ requirements:
     - 'bioconductor-genomicfeatures >=1.32.2,<1.34.0'
     - 'bioconductor-genomicranges >=1.32.7,<1.34.0'
     - 'bioconductor-guideseq >=1.10.0,<1.12.0'
-    - r-base
+    - r-base >=3.5
     - r-dt
     - r-hash
     - r-shiny

diff --git a/recipes/bioconductor-crlmm/meta.yaml b/recipes/bioconductor-crlmm/meta.yaml
@@ -26,7 +26,7 @@ requirements:
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-snpchip >=2.26.0,<2.28.0'
-    - r-base
+    - r-base >=3.5
     - r-beanplot
     - r-ellipse
     - r-ff
@@ -45,7 +45,7 @@ requirements:
     - 'bioconductor-oligoclasses >=1.42.0,<1.44.0'
     - 'bioconductor-preprocesscore >=1.42.0,<1.44.0'
     - 'bioconductor-snpchip >=2.26.0,<2.28.0'
-    - r-base
+    - r-base >=3.5
     - r-beanplot
     - r-ellipse
     - r-ff

diff --git a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml
@@ -22,7 +22,7 @@ requirements:
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-experimenthub >=1.6.1,<1.8.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - 'r-dplyr >=0.5.0'
     - r-magrittr
     - r-tidyr
@@ -31,7 +31,7 @@ requirements:
     - 'bioconductor-biobase >=2.40.0,<2.42.0'
     - 'bioconductor-experimenthub >=1.6.1,<1.8.0'
     - 'bioconductor-s4vectors >=0.18.3,<0.20.0'
-    - r-base
+    - r-base >=3.5
     - 'r-dplyr >=0.5.0'
     - r-magrittr
     - r-tidyr

diff --git a/recipes/bioconductor-curatedovariandata/meta.yaml b/recipes/bioconductor-curatedovariandata/meta.yaml
@@ -20,11 +20,11 @@ requirements:
   host:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biocgenerics >=0.26.0,<0.28.0'
-    - r-base
+    - r-base >=3.5
   run:
     - 'bioconductor-affy >=1.58.0,<1.60.0'
     - 'bioconductor-biocgenerics >=0.26.0,<0.28.0'
-    - r-base
+    - r-base >=3.5
     - wget
 test:
   commands: