update bioconvert to v0.2.0 (#10316)

* update bioconvert to v0.2.0
bioconda · Aug 10, 2018 · 5481977 · 5481977
1 parent 3bde30a
commit 5481977
Showing 1 changed file with 33 additions and 8 deletions.
diff --git a/recipes/bioconvert/meta.yaml b/recipes/bioconvert/meta.yaml
@@ -1,10 +1,14 @@
+{% set name = "bioconvert" %}
+{% set version = "0.2.0" %}
+{% set md5 =  "c5720009c8d8acba208aa763f2a697c4" %}
+
 package:
-  name: bioconvert
-  version: "0.0.10"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.python.org/packages/51/16/36baee3cf988d3f043e98341c43c05fd771f5dbeaef118ace23853e005d5/bioconvert-0.0.10.tar.gz
-  md5: a7073c2b80712e0884c6414eea4dee24
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  md5: {{ md5 }}
 
 build:
   skip: True # [py27]
@@ -23,8 +27,13 @@ requirements:
     - biopython
     - mappy
     - matplotlib
+    - networkx
     - pyyaml
     - pysam
+    - pyexcel
+    - pyexcel-ods3
+    - pyexcel-xls
+    - xlrd
 
   run:
     - python
@@ -34,20 +43,36 @@ requirements:
     - biopython
     - mappy
     - matplotlib
+    - networkx
     - pyyaml
     - pysam
+    - pyexcel
+    - pyexcel-ods3
+    - pyexcel-xls
+    - xlrd
     - bamtools
     - bcftools
     - bedtools
     - bioawk
     - deeptools
-    - dsrc # [not osx]
+    - dsrc
+    - go ==1.10.3
     - pbzip2
     - pigz
+    - plink
     - sambamba
     - samtools
     - seqtk
     - squizz
+    - sra-tools
+    - ucsc-bedgraphtobigwig
+    - ucsc-bigwigtobedgraph
+    - ucsc-fatotwobit
+    - ucsc-twobittofa
+    - wiggletools
+    - sed
+    - mawk
+
 
 test:
   imports:
@@ -62,15 +87,15 @@ test:
   commands:
     - MPLBACKEND=agg bioconvert --help
     - MPLBACKEND=agg bioconvert_init --help
+    - MPLBACKEND=agg bioconvert_stats --help
 
 extra:
   container:
     # needs libGL.so.1
     extended-base: true
 
-
 about:
   home: http://bioconvert.readthedocs.io/
-  license: BSD License
+  license: GPL3
   summary: 'convert various bioinformatics formats'
-  license_family: BSD
+  license_family: GPL