Update libmaus2 to v2.0.183

bioconda · Nov 18, 2024 · 2fbd5e0 · 2fbd5e0
1 parent bd51407
commit 2fbd5e0
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Showing 2 changed files with 33 additions and 17 deletions.
diff --git a/recipes/libmaus2/build.sh b/recipes/libmaus2/build.sh
@@ -2,9 +2,16 @@
 set -eu
 export LIBS="-lstdc++fs -lcurl"
 
-./configure --prefix $PREFIX --with-snappy --with-io_lib
+autoreconf -if
+autoupdate
+./configure --prefix="${PREFIX}" CXX="${CXX}" CC="${CC}" \
+	LDFLAGS="${LDFLAGS} -L${PREFIX}/lib" \
+	CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include" \
+	--with-snappy --with-io_lib --with-libdeflate \
+	--with-libsecrecy --with-nettle --with-parasail \
+	--with-lzma --with-gmp
 
 cat config.log
 
-make -j${CPU_COUNT}
+make -j"${CPU_COUNT}"
 make install
diff --git a/recipes/libmaus2/meta.yaml b/recipes/libmaus2/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "libmaus2" %}
-{% set version = "2.0.810" %}
-{% set datestamp = "20220216151520" %}
-{% set sha256hash = "6639289aba6bbece3057ab7d1782a1b94b80a9ae22fc3d136a78ba8f7b9edaee" %}
+{% set version = "2.0.813" %}
+{% set datestamp = "20221210220409" %}
+{% set sha256 = "4125f8daefd6900185675026498369457088e25e81029597659249be49cd5261" %}
 
 package:
   name: {{ name }}
@@ -10,13 +10,13 @@ package:
 build:
   # There's some issue with clang
   skip: True  # [osx]
-  number: 6
+  number: 0
   run_exports:
-    - {{ pin_subpackage('libmaus2', max_pin='x.x') }}
+    - {{ pin_subpackage('libmaus2', max_pin='x') }}
 
 source:
   url: https://gitlab.com/german.tischler/libmaus2/-/archive/{{ version }}-release-{{ datestamp }}/libmaus2-{{ version }}-release-{{ datestamp }}.tar.gz
-  sha256: {{ sha256hash }}
+  sha256: {{ sha256 }}
   patches:
     # Until gcc >=8 is being used
     - patch
@@ -26,31 +26,40 @@ requirements:
     - make
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
+    - autoconf
+    - automake
+    - libtool
+    - pkg-config
   host:
     - boost-cpp
     - libcurl
     # snappy 1.1.9 introduced a binary incompatible build change (https://github.com/mhx/dwarfs/issues/56#issuecomment-896857211)
     # enabling -fno-rtti. libmaus needs typeid, which is only available with activated rtti.
     # Hence, we stick with snappy 1.1.8
-    - snappy =1.1.8 
+    - snappy =1.1.8
     - staden_io_lib >=1.14.14
+    - libdeflate
+    - gmp
+    - nettle
+    - parasail-python
   run:
     - boost-cpp
-    - libcurl
     - snappy =1.1.8
     - staden_io_lib >=1.14.14
-  ignore_run_exports:
-    - snappy
-
-about:
-  home: https://gitlab.com/german.tischler/libmaus2
-  license: GPL3
-  summary: collection of data structures and algorithms for NGS data
+    - parasail-python
 
 test:
   commands:
     - echo
 
+about:
+  home: https://gitlab.com/german.tischler/libmaus2
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: GPLv3
+  summary: "Collection of data structures and algorithms for NGS data."
+  dev_url: https://gitlab.com/german.tischler/libmaus2
+
 extra:
   additional-platforms:
     - linux-aarch64