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Raw input data locations #21

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Raw input data locations #21

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laughedelic
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@laughedelic laughedelic commented Nov 21, 2016

See bio4j/release.titan#6.

  • enzyme
  • go
  • ncbiTaxonomy
  • uniprot
  • uniref

@laughedelic laughedelic self-assigned this Nov 7, 2016
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laughedelic commented Nov 7, 2016

Some code from 3 years ago to copy-paste here (selectively):

Also DownloadAndPrepareBio4jSources.sh

This was referenced Nov 23, 2016
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Done. Next: #22.

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After a talk with @marina-manrique, I think something has to be changed here before merging. I found forgotten bio4j/release.titan#4 and there UniProt input data is different. So I'd like to see this with @eparejatobes:

  • are we using only old releases?
  • what is exact set of input files we need for UniProt import?
  • do we copy UniProt data to S3 or not?

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We can talk this out, it'll be faster.

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Ok. When?

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