Related Projects

Projects that use Bio2RDF

• Regenbase

Other SPARQL endpoints

• OpenLink's Linked Open Data browser and SPARQL endpoint: various
• NCBO BioPortal: Biomedical ontologies
• Aber-OWL: Biomedical Ontologies
• BioPortal: Biomedical Ontology repository
• OntoBee: OBO ontologies
• BioGateway
• EBI RDF: Biomodels, Biosamples, ChEMBL, GXA, Reactome
• PubChem RDF: Chemicals and more!
• MeSH RDF: Terminiology
• MBGD: microbial genomes
• Wikipathways: pathways
• PathwayCommons: pathways
• BioTea: PubmedCentral Articles
• DisGeNet: Disease-Gene associations
• GWAS Central: Variant-Disease associations
• identifiers.org: Life Science Identifiers
• LinkedLifeData : Commercial effort
• SpringerNature ScigGraph: research landscape, such as funders, research projects and grants, conferences, affiliations, and publications.
• OpenCitations: open citation graph
• Allen Brain Atlas: Brain imaging data
• [[Gene Ontology|http://rdf.geneontology.org]: annotations of gene function

SPARQL Endpoint monitoring

• SPARQLES
• DyLDO The Dynamic Linked Data Observatory

SPARQL-Based Tools

• YASGUI demo
• SPARQLED
• GoSPARQLed demo
• SPARQLGraph
• Disqover
• Linked Data Query Wizard
• Keyword Search
• Gingseng
• Facete
• Payola Visualize linked data
• grlc Publish SPARQL queries as API

SPARQL triple stores

• Virtuoso Open Source Edition
• Blazegraph
• Ontotext GraphDB
• Halyard

Other Tools

• Graphity
• Trifid-LD - Lightweight Linked Data Server and Proxy
• ELDA
• Apache Marmotta - Linked Data Platform
• EBI LODEStar
• Linked Data-fu
• grlc automatically converts SPARQL queries into RESTful APIs
• ABSTAT linked data summarization
• STTL SPARQL Template Transformation Language
• RDF2h RDF Templates

Linked Data & Semantic Web Tutorials

• RDConnect Tutorial
• OHSU BD2K Open Educational Resources
• MOOC "Introduction to a Web of Linked Data"

Indexing Projects

• DataMed
• Repositive
• OMICS Discovery Index