Update SeqCode API endpoint to v1

bio-miga · May 2, 2024 · a71e2a6 · a71e2a6
1 parent bf90851
commit a71e2a6
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/lib/miga/cli/action/download/seqcode.rb b/lib/miga/cli/action/download/seqcode.rb
@@ -32,8 +32,8 @@ def remote_list
         :seqcode, :'type-genomes', nil, :json, nil, page: current_page
       )
       doc = MiGA::Json.parse(json, contents: true)
-      current_page = doc[:current_page] + 1
-      total_pages  = doc[:total_pages]
+      current_page = doc.dig(:response, :current_page) + 1
+      total_pages  = doc.dig(:response, :total_pages)
 
       doc[:values].each do |name|
         next unless name[:type_material]

diff --git a/lib/miga/remote_dataset/base.rb b/lib/miga/remote_dataset/base.rb
@@ -22,7 +22,7 @@ module MiGA::RemoteDataset::Base
   @@_EUTILS        = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/'
   @@_EBI_API       = 'https://www.ebi.ac.uk/Tools/'
   @@_GTDB_API      = 'https://gtdb-api.ecogenomic.org/'
-  @@_SEQCODE_API   = 'https://disc-genomics.uibk.ac.at/seqcode/'
+  @@_SEQCODE_API   = 'https://api.seqco.de/v1/'
   @@_EUTILS_BUILD  = lambda { |service, q|
     q[:api_key] = ENV['NCBI_API_KEY'] if ENV['NCBI_API_KEY']
     uri_safe_join(@@_EUTILS, "#{service}.fcgi")

diff --git a/lib/miga/version.rb b/lib/miga/version.rb
@@ -12,15 +12,15 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 14, 7].freeze
+  VERSION = [1.3, 15, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
   VERSION_NAME = 'mezzotint'
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 4, 24)
+  VERSION_DATE = Date.new(2024, 5, 2)
 
   ##
   # References of MiGA