Bypass RDP Classifier in versions when missing

bio-miga · Sep 28, 2024 · 8c64843 · 8c64843
1 parent 8198090
commit 8c64843
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/lib/miga/version.rb b/lib/miga/version.rb
@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 21, 2].freeze
+  VERSION = [1.3, 21, 3].freeze
 
   ##
   # Nickname for the current major.minor version.

diff --git a/scripts/ssu.bash b/scripts/ssu.bash
@@ -78,8 +78,10 @@ $(
     bedtools --version 2>&1 | perl -pe 's/^bedtools //'
     echo "=> Enveomics Collection"
     echo "version unknown"
-    echo "=> RDP Naive Bayes Classifier"
-    gzip -cd "${DATASET}.rdp.tsv.gz" | tail -n 1 | perl -pe 's/.*: //'
+    if [[ -e "${DATASET}.rdp.tsv.gz" ]] ; then
+      echo "=> RDP Naive Bayes Classifier"
+      gzip -cd "${DATASET}.rdp.tsv.gz" | tail -n 1 | perl -pe 's/.*: //'
+    fi
     echo "=> tRNAscan-SE"
     tRNAscan-SE -h 2>&1 | head -n 2 | tail -n 1 | perl -pe 's/^tRNAscan-SE //'
   fi