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Upgrade varfish-annotator #168

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holtgrewe opened this issue Jul 22, 2022 · 1 comment · Fixed by #169
Closed

Upgrade varfish-annotator #168

holtgrewe opened this issue Jul 22, 2022 · 1 comment · Fixed by #169
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Is your feature request related to a problem? Please describe.
An upcoming varfish-server version has a changed format for structural variants. We need to bump the versions of varfish-annotator for SV export.

Describe the solution you'd like
Upgrade the version of varfish-annotator-cli package.

Describe alternatives you've considered
N/A

Additional context
N/A
@holtgrewe holtgrewe self-assigned this Jul 22, 2022
@holtgrewe holtgrewe linked a pull request Jul 22, 2022 that will close this issue
Bumping varfish-annotator-cli (#168) #169
Merged
holtgrewe added a commit that referenced this issue Jul 22, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
0668159 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Jul 22, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
4a45389 
Also, passing in pedigree file to annotator.
@holtgrewe
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holtgrewe commented Jul 22, 2022 •
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Because of varfish-org/varfish-annotator#56 we will need to upgrade to v0.25 once released.

holtgrewe added a commit that referenced this issue Jul 22, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
c53902d 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Jul 22, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
9e413a1 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Aug 28, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
361f414 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Aug 28, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
84c068a 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Aug 28, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
8455ad8 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Sep 5, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
395b368 
Also, passing in pedigree file to annotator.
holtgrewe added a commit that referenced this issue Sep 5, 2022
@holtgrewe
Bumping varfish-annotator-cli (#168)
9d88ca4 
Also, passing in pedigree file to annotator.
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Bumping varfish-annotator-cli (#168) bihealth/snappy-pipeline
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