feat: bump ngs-chew to 0.6.x, adding aafs to output (#317)

bihealth · Jan 3, 2023 · feb13a3 · feb13a3
1 parent 53c88aa
commit feb13a3
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/snappy_wrappers/wrappers/ngs_chew/fingerprint/environment.yaml b/snappy_wrappers/wrappers/ngs_chew/fingerprint/environment.yaml
@@ -1,6 +1,5 @@
 channels:
   - conda-forge
   - bioconda
-  - file:///data/gpfs-1/users/holtgrem_c/scratch/art/LinuxArtifacts/packages
 dependencies:
-  - ngs-chew >=0.5.0,<0.6.0
+  - ngs-chew >=0.6.0,<0.7.0
diff --git a/snappy_wrappers/wrappers/ngs_chew/fingerprint/wrapper.py b/snappy_wrappers/wrappers/ngs_chew/fingerprint/wrapper.py
@@ -44,6 +44,7 @@
 
 ngs-chew fingerprint \
     --reference {snakemake.config[static_data_config][reference][path]} \
+    --output-aafs \
     --output-fingerprint {snakemake.output.npz} \
     --input-bam {snakemake.input.bam} \
     --genome-release {genome_release}