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fix: fixing problem in running varfish-export
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The code previously erroneously required consistent library kits.
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holtgrewe committed Feb 22, 2023
1 parent 9717be7 commit ae00feb
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion snappy_pipeline/workflows/varfish_export/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -224,7 +224,7 @@ def _get_index_ngs_libraries(
"""
for sheet in filter(is_not_background, self.parent.shortcut_sheets):
for pedigree in sheet.cohort.pedigrees:
if not require_consistent_pedigree_kits or self._is_pedigree_good(pedigree):
if self._is_pedigree_good(pedigree):
index = pedigree.index.dna_ngs_library.name
donors = [
donor.dna_ngs_library.name
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