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chore: update github CI #267

chore: update github CI

chore: update github CI #267

Triggered via pull request December 11, 2024 13:30
Status Failure
Total duration 35s
Artifacts

ci-e2e.yml

on: pull_request
Dryrun_Tests
27s
Dryrun_Tests
Matrix: Tests
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1 error and 4 warnings
Dryrun_Tests
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
Dryrun_Tests
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' as a way of removing 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' to remove this warning.
Dryrun_Tests
CondaKeyError: 'channels': value 'defaults' not present in config
Dryrun_Tests
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Dryrun_Tests
LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides requested sphinx_rtd_theme ~=2.0.0 - nothing provides requested sphinx-mdinclude ~=0.6.0 - nothing provides requested sphinx ~=7.3.7 - nothing provides black >=23.1.0,<24.0 needed by snakefmt-0.8.5-pyhdfd78af_0 - nothing provides requested ruff ~=0.4.8 - nothing provides requested ruamel.yaml 0.18.6 - nothing provides requested python 3.12** - nothing provides requested pytest-subprocess ~=1.5.0 - nothing provides requested pytest-mock ~=3.14.0 - nothing provides requested pytest-cov ~=5.0.0 - nothing provides requested pytest ~=8.2.2 - nothing provides requested pyfakefs ~=5.5.0 - nothing provides requested pydantic 2.7** - nothing provides requested pre-commit ~=3.7.1 - nothing provides requested matplotlib 3.8.4 - nothing provides requested jinja2 3.1.4 - nothing provides requested gzip ~=1.13 - nothing provides requested gxx_linux-64 ~=13.2.0 - nothing provides requested git-lfs ~=3.5.1 - nothing provides requested gcc_linux-64 ~=13.2.0 - nothing provides requested gawk ~=5.3.0 - nothing provides requested coveralls ~=4.0.1 - nothing provides requested coverage ~=7.5.3 - nothing provides requested coreutils ~=9.5 - nothing provides requested bash ~=5.2.21 - nothing provides ncurses >=6.4.20240210,<7.0a0 needed by samtools-1.20-h50ea8bc_0 - nothing provides libcurl >=8.8.0,<9.0a0 needed by htslib-1.20-h5efdd21_1 - nothing provides toposort >=1.10 needed by snakemake-minimal-7.32.0-pyhdfd78af_0 - nothing provides libcurl >=8.8.0,<9.0a0 needed by htslib-1.20-h5efdd21_1 Could not solve for environment specs The following packages are incompatible ├─ bash ~=5.2.21 does not exist (perhaps a typo or a missing channel); ├─ bcftools 1.20 is not installable because it requires │ └─ htslib >=1.20,<1.22.0a0 but there are no viable options │ ├─ htslib 1.20 would require │ │ └─ libcurl >=8.8.0,<9.0a0 , which does not exist (perhaps a missing channel); │ ├─ htslib 1.20 would require │ │ └─ openssl >=3.2.1,<4.0a0 , which does not exist (perhaps a missing channel); │ └─ htslib 1.21 would require │ └─ libgcc >=12 , which does not exist (perhaps a missing channel); ├─ coreutils ~=9.5 does not exist (perhaps a typo or a missing channel); ├─ coverage ~=7.5.3 does not exist (perhaps a typo or a missing channel); ├─ coveralls ~=4.0.1 does not exist (perhaps a typo or a missing channel); ├─ gawk ~=5.3.0 does not exist (perhaps a typo or a missing channel); ├─ gcc_linux-64 ~=13.2.0 does not exist (perhaps a typo or a missing channel); ├─ git-lfs ~=3.5.1 does not exist (perhaps a typo or a missing channel); ├─ gxx_linux-64 ~=13.2.0 does not exist (perhaps a typo or a missing channel); ├─ gzip ~=1.13 does not exist (perhaps a typo or a missing channel); ├─ htslib 1.20 , which cannot be installed (as previously explained); ├─ jinja2 3.1.4 does not exist (perhaps a typo or a missing channel); ├─ matplotlib 3.8.4 does not exist (perhaps a typo or a missing channel); ├─ pre-commit ~=3.7.1 does not exist (perhaps a typo or a missing channel); ├─ pydantic 2.7** does not exist (perhaps a typo or a missing channel); ├─ pyfakefs ~=5.5.0 does not exist (perhaps a typo or a missing channel); ├─ pytest-cov ~=5.0.0 does not exist (perhaps a typo or a missing channel); ├─ pytest-mock ~=3.14.0 does not exist (perhaps a typo or a missing channel); ├─ pytest-subprocess ~=1.5.0 does not exist (perhaps a typo or a missing channel); ├─ pytest ~=8.2.2 does not exist (perhaps a typo or a missing channel); ├─ python 3.12** does not exist (perhaps a typo or a missing channel); ├─ ruamel.yaml 0.18.6 does not exist (perhaps a typo or a missing channel); ├─ ruff ~=0.4.8 does not exist (perhaps a typo or a missing channel); ├─ samtools 1.20 is not installable because there are no viable options │ ├─ samtools 1.20 would require │ │ └─ ncurses >=6.4.20240210,<7.0a0 , which does not exist (perhaps a missing channel); │ └─ samtools 1.20 would require │ └─ ncurses >=6.5,<7.0