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feat: adjust landing and static pages to NAR WSI requirements (#303) #306

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merged 1 commit into from
Dec 18, 2023
Merged

feat: adjust landing and static pages to NAR WSI requirements (#303) #306

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6 changes: 5 additions & 1 deletion frontend/src/components/FooterDefault.vue
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Expand Up @@ -17,7 +17,11 @@ onMounted(() => {
<small>
Developed by BIH CUBI. For support and feedback, please contact
<a href="mailto:[email protected]">[email protected]</a>. REEV Explains
and Evaluates Variants {{ miscStore?.appVersion }}
and Evaluates Variants {{ miscStore?.appVersion }}.
<router-link to="/info#terms-of-use">
Terms of use
<small> <v-icon>mdi-arrow-right-circle-outline</v-icon> </small> </router-link
>.
</small>
</v-footer>
</template>
49 changes: 49 additions & 0 deletions frontend/src/components/StaticViews/TermsView.vue
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Expand Up @@ -3,7 +3,19 @@
<v-card-title>Terms of Use</v-card-title>
<v-divider />
<v-card-text>
<div class="text-h6">Intended Use</div>
<p>REEV is for research use only software</p>

<div class="text-h6">Disclaimer</div>
<p>
The information on this website is not intended for direct diagnostic use or medical
decision-making without review by a genetics professional. Individuals should not change
their health behavior solely on the basis of information contained on this website.
Charité/BIH do not independently verify the submitted information. If you have questions
about the information contained on this website, please see a health care professional.
</p>

<div class="text-h6">Exclusion of Liability</div>
<p>
The software is provided "as is," without warranty of any kind, express or implied,
including but not limited to the warranties of merchantability, fitness for a particular
Expand All @@ -12,6 +24,43 @@
otherwise, arising from, out of, or in connection with the software or the use or other
dealings in the software.
</p>

<div class="text-h6">Cookie Policy</div>
<p>
We use cookies to store information about your current session on your computer
<strong>only after you login</strong>. We do not use cookies to track your usage of the
website or to collect any personal information about you. We do not share this information
with any third parties.
</p>
<p>
Without logging in, certain functionality can only be provided by using your local browser
storage, such as storing case information.
</p>

<div class="text-h6">Collected Usage Information</div>
<p>
We collect information about your usage of the website, including the pages you visit, the
time and date of your visit, the time spent on those pages and other statistics. We use this
information to improve the website and to better understand how people use it. We do not
share this information with any third parties.
</p>

<div class="text-h6">Posted Content License</div>
<p>
Most information that you enter into REEV is private and will not be shared to any third
party.
</p>
<p>
However, some information is public, such as "public comments". Such publically accessible
information is governed by the following terms.
</p>
<p>
All publicly accessible user contributions are licensed under
<a href="https://creativecommons.org/licenses/by-sa/4.0/" target="_blank">
Creative Commons Attribution-ShareAlike 4.0 license
<small><v-icon>mdi-launch</v-icon></small> </a
>.
</p>
</v-card-text>
</v-card>
</template>
130 changes: 90 additions & 40 deletions frontend/src/views/HomeView.c.ts
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Expand Up @@ -17,6 +17,94 @@ export interface Section {
examples: Example[]
}

const SEQVARS_DEV: Example[] = [
{
query: 'NM_007294.4(BRCA1):c.5123C>A',
hint: 'HGVS transcript SNV'
},
{
query: 'NM_000179.3:c.4082del',
hint: 'HGVS transcript deletion'
},
{
query: 'NC_000017.10:g.41197728G>T',
hint: 'HGVS genomic SNV'
},
{
query: 'GRCh37-chr17-41197751-G-T',
hint: 'gnomAD style variant'
},
{
query: 'NC_000017.11:43039470:G:A',
hint: 'Canonical SPDI'
}
]

const SEQVARS_PROD: Example[] = [
{
query: 'GRCh37:chr6:24302274:T:C',
hint: 'splicing variant in SPDI notation'
},
{
query: 'NM_001267039.1(LARP7)>c.855dup',
hint: 'frameshift variant in HGVS notation'
},
{
query: 'GRCh37-chrX-77245290-G-C',
hint: 'X-chromosomal SNV in gnomAD notation'
},
{
query: 'NM_004780.3(TCEAL1):c.124_138dup',
hint: 'in-frame insertion in HGVS notation'
},
{
query: 'chrMT:7497:G:A',
hint: 'mitochondrial SNV in SPDI notation'
},
{
query: 'GRCh38-chrMT-7465-A-AC',
hint: 'mitochondrial insertion in gnomAD notation'
}
]

const STRUCVARS_DEV: Example[] = [
{
query: 'DEL:chr17:41176312:41277500',
hint: 'Deletion on chr17'
},
{
query: 'DUP-chrX-73565114-73956354',
hint: 'Duplication on chrX'
},
{
query: 'arr[GRCh37] 7q11(72,650,120_74,154,209)x1',
hint: 'ISCN notation'
},
{
query: 'GRCh37 7q11(72,650,120_74,154,209)x1',
hint: 'Shorter ISCN'
}
]

const STRUCVARS_PROD: Example[] = [
{
query: 'DEL:chr17:41176312:41277500',
hint: 'Deletion on chr17'
},
{
query: 'DUP-chrX-73565114-73956354',
hint: 'Duplication on chrX'
},
{
query: 'arr[GRCh37] 7q11(72,650,120_74,154,209)x1',
hint: 'ISCN notation'
},
{
query: 'GRCh37 7q11(72,650,120_74,154,209)x1',
hint: 'Shorter ISCN'
}
]

/** Examples to display below the search on the homepage. */
export const EXAMPLES: Section[] = [
{
Expand All @@ -39,49 +127,11 @@ export const EXAMPLES: Section[] = [
{
title: 'Sequence Variants',
text: 'Provide variants in HGSV notation, gnomAD, or SPDI-style',
examples: [
{
query: 'NM_007294.4(BRCA1):c.5123C>A',
hint: 'HGVS transcript SNV'
},
{
query: 'NM_000179.3:c.4082del',
hint: 'HGVS transcript deletion'
},
{
query: 'NC_000017.10:g.41197728G>T',
hint: 'HGVS genomic SNV'
},
{
query: 'GRCh37-chr17-41197751-G-T',
hint: 'gnomAD style variant'
},
{
query: 'NC_000017.11:43039470:G:A',
hint: 'Canonical SPDI'
}
]
examples: import.meta.env.MODE !== 'development' ? SEQVARS_DEV : SEQVARS_PROD
},
{
title: 'Structural Variants',
text: 'You can provide variants in the formats below',
examples: [
{
query: 'DEL:chr17:41176312:41277500',
hint: 'Deletion on chr17'
},
{
query: 'DUP-chrX-73565114-73956354',
hint: 'Duplication on chrX'
},
{
query: 'arr[GRCh37] 7q11(72,650,120_74,154,209)x1',
hint: 'ISCN notation'
},
{
query: 'GRCh37 7q11(72,650,120_74,154,209)x1',
hint: 'Shorter ISCN'
}
]
examples: import.meta.env.MODE === 'development' ? STRUCVARS_DEV : STRUCVARS_PROD
}
]
7 changes: 7 additions & 0 deletions frontend/src/views/HomeView.vue
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Expand Up @@ -64,6 +64,13 @@ const mainBackgroundColor = computed(() => {
<a href="https://reev.readthedocs.io/en/latest/doc_tutorial.html" target="_blank">
tutorial
<small><v-icon>mdi-launch</v-icon></small> </a
>. REEV is free to use for all users (see
<router-link to="/info#terms-of-use">
terms of use
<small> <v-icon>mdi-arrow-right-circle-outline</v-icon> </small> </router-link
>). The software itself open source and can be found at
<a href="https://github.com/bihealth/reev" target="_blank">
GitHub <small><v-icon>mdi-launch</v-icon></small> </a
>.
</p>
</v-sheet>
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8 changes: 8 additions & 0 deletions frontend/src/views/LoginView.vue
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Expand Up @@ -99,6 +99,14 @@ onMounted(async () => {
</v-card-text>
</v-card>

<v-sheet class="mb-5 mt-5 pa-3 bg-grey-lighten-2">
By logging in, you agree to our
<router-link to="/info#terms-of-use">
terms of use
<small> <v-icon>mdi-arrow-right-circle-outline</v-icon> </small> </router-link
>.
</v-sheet>

<v-card v-if="userStore.oauth2Providers.length > 0" class="mb-5 mt-5" variant="tonal">
<v-card-title> Login with... </v-card-title>
<v-card-text class="text-medium-emphasis text-caption mt-3">
Expand Down
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