tests fixes

bihealth · Dec 8, 2023 · 9805850 · 9805850
1 parent 499b7d3
commit 9805850
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Showing 12 changed files with 15 additions and 131 deletions.
diff --git a/frontend/src/components/__tests__/SeqvarDetails/ClinsigCard/CriterionSwitch.spec.ts b/frontend/src/components/__tests__/SeqvarDetails/ClinsigCard/CriterionSwitch.spec.ts
diff --git a/frontend/src/components/__tests__/SeqvarDetails/ClinsigCard/SummarySheet.spec.ts b/frontend/src/components/__tests__/SeqvarDetails/ClinsigCard/SummarySheet.spec.ts
diff --git a/...s/__tests__/SeqvarDetails/ClinVar.spec.ts → ...tests__/SeqvarDetails/ClinvarCard.spec.ts b/...s/__tests__/SeqvarDetails/ClinVar.spec.ts → ...tests__/SeqvarDetails/ClinvarCard.spec.ts
diff --git a/frontend/src/components/__tests__/SeqvarDetails/FreqsAutosomal.spec.ts b/frontend/src/components/__tests__/SeqvarDetails/FreqsAutosomal.spec.ts
diff --git a/...ests__/SeqvarDetails/VariantFreqs.spec.ts → ...__tests__/SeqvarDetails/FreqsCard.spec.ts b/...ests__/SeqvarDetails/VariantFreqs.spec.ts → ...__tests__/SeqvarDetails/FreqsCard.spec.ts
@@ -26,7 +26,7 @@ const seqvarInfoMitochondrial = {
 }
 
 describe.concurrent('Freqs', async () => {
-  it('renders the Freqs info', async () => {
+  it('renders the Freqs info for Autosonmal Variants', async () => {
     const { wrapper } = await setupMountedComponents(
       { component: Freqs, template: false },
       {
@@ -50,7 +50,7 @@ describe.concurrent('Freqs', async () => {
         }
       }
     )
-    const freqsAutosomal = wrapper.findComponent(VariantDetailsFreqsMitochondrial)
-    expect(freqsAutosomal.exists()).toBe(true)
+    const freqsMitochondrial = wrapper.findComponent(VariantDetailsFreqsMitochondrial)
+    expect(freqsMitochondrial.exists()).toBe(true)
   })
 })
diff --git a/...s__/VariantDetails/FreqsAutosomal.spec.ts → ...rDetails/FreqsCard/AutosomalFreqs.spec.ts b/...s__/VariantDetails/FreqsAutosomal.spec.ts → ...rDetails/FreqsCard/AutosomalFreqs.spec.ts
diff --git a/.../SeqvarDetails/FreqsMitochondrial.spec.ts → ...ails/FreqsCard/MitochondrialFreqs.spec.ts b/.../SeqvarDetails/FreqsMitochondrial.spec.ts → ...ails/FreqsCard/MitochondrialFreqs.spec.ts
diff --git a/...ests__/SeqvarDetails/ScoreDisplay.spec.ts → ...ls/VariantScoresCard/ScoreDisplay.spec.ts b/...ests__/SeqvarDetails/ScoreDisplay.spec.ts → ...ls/VariantScoresCard/ScoreDisplay.spec.ts
diff --git a/...ests__/SeqvarDetails/Conservation.spec.ts → ...ariantScoresCard/UcscConservation.spec.ts b/...ests__/SeqvarDetails/Conservation.spec.ts → ...ariantScoresCard/UcscConservation.spec.ts
diff --git a/frontend/src/components/__tests__/SeqvarDetails/VariantValidatorCard.spec.ts b/frontend/src/components/__tests__/SeqvarDetails/VariantValidatorCard.spec.ts
@@ -3,16 +3,16 @@ import { nextTick } from 'vue'
 
 import * as VariantValidatorInfo from '@/assets/__tests__/BRCA1VariantValidator.json'
 import VariantValidator from '@/components/SeqvarDetails/VariantValidatorCard.vue'
-import { setupMountedComponents } from '@/lib/test-utils'
+import type { Seqvar } from '@/lib/genomicVars'
+import { deepCopy, setupMountedComponents } from '@/lib/test-utils'
 
-const smallVariantInfo = {
-  release: 'grch37',
-  chromosome: 'chr17',
-  start: '43044295',
-  end: '43044295',
-  reference: 'G',
-  alternative: 'A',
-  hgnc_id: 'HGNC:1100'
+const seqvarInfo: Seqvar = {
+  genomeBuild: 'grch37',
+  chrom: '17',
+  pos: 43044295,
+  del: 'G',
+  ins: 'A',
+  userRepr: 'grch37-17-43044295-G-A'
 }
 
 describe.concurrent('VariantValidator', async () => {
@@ -25,7 +25,7 @@ describe.concurrent('VariantValidator', async () => {
       { component: VariantValidator, template: false },
       {
         props: {
-          smallVariant: smallVariantInfo
+          seqvar: deepCopy(seqvarInfo)
         }
       }
     )
@@ -50,7 +50,7 @@ describe.concurrent('VariantValidator', async () => {
       { component: VariantValidator, template: false },
       {
         props: {
-          smallVariant: smallVariantInfo
+          seqvar: deepCopy(seqvarInfo)
         }
       }
     )

diff --git a/frontend/src/components/__tests__/VariantDetails/VariantValidatorCard.spec.ts b/frontend/src/components/__tests__/VariantDetails/VariantValidatorCard.spec.ts
diff --git a/frontend/src/lib/utils.ts b/frontend/src/lib/utils.ts
@@ -54,7 +54,7 @@ export const separateIt = (value: number, separator: string = ' '): string => {
  * @returns whether the position is on the mitochondrial genome
  */
 export const isVariantMt = (smallVar: any): boolean => {
-  return ['MT', 'M', 'chrMT', 'chrM'].includes(smallVar?.chromosome)
+  return ['MT', 'M', 'chrMT', 'chrM'].includes(smallVar?.chrom)
 }
 
 /**