feat: adding store/strucvarInfo (#41)

bihealth · Jan 30, 2024 · 9c84f26 · 9c84f26
1 parent 8a276d8
commit 9c84f26
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Showing 7 changed files with 3,791 additions and 4 deletions.
diff --git a/src/api/mehari/client.ts b/src/api/mehari/client.ts
@@ -2,7 +2,7 @@ import type { LinearStrucvar, Seqvar } from '../../lib/genomicVars'
 import { SeqvarResult, StrucvarResult } from './types'
 
 /** API base URL to use. */
-const API_BASE_URL = '/internal/proxy/pubtator3-api'
+const API_BASE_URL = '/internal/proxy/mehari/'
 
 /**
  * Client for Mehari API requests.

diff --git a/src/api/mehari/types.ts b/src/api/mehari/types.ts
@@ -443,7 +443,7 @@ export interface StrucvarResult$Api {
   /** The original query records. */
   query: SeqvarQuery$Api
   /** The resulting records for the scored genes. */
-  result: SeqvarResultEntry$Api[]
+  result: GeneTranscriptEffects$Api[]
 }
 
 /**
@@ -455,7 +455,7 @@ export interface StrucvarResult {
   /** The original query records. */
   query: SeqvarQuery
   /** The resulting records for the scored genes. */
-  result: SeqvarResultEntry[]
+  result: GeneTranscriptEffects[]
 }
 
 /**
@@ -467,7 +467,7 @@ class StrucvarResult$Type {
     return {
       version: Version.fromJson(json.version),
       query: SeqvarQuery.fromJson(json.query),
-      result: json.result.map((entry) => SeqvarResultEntry.fromJson(entry))
+      result: json.result.map((entry) => GeneTranscriptEffects.fromJson(entry))
     }
   }
 }