CHANGELOG.md

Changelog

0.7.1 (2024-06-09)

Continuous Integration

• disable building package release (#211) (d0d4496)

0.7.0 (2024-06-09)

Features

• adding breakpoint SV type support to library (#142) (eb519cc)
• Collapse Button for PubTator3 (#585) (#173) (a67e225)
• implement SV type INS on the library level (#146) (5125223)
• make components more robust in case of store/api errors (#160) (#161) (002a362)
• use api/mehari rather than api/dotty in store/geneInfo (#120) (5f50789)

Bug Fixes

• adjust to annonars clinvar_public cardinality changes (#209) (#210) (18df4a5)
• allow tuning of StrucvarGeneListCard (#144) (bc98bdb)
• annonars call wrong for grch38 and chromosomes prefixed with chr… (#185) (a323f5d)
• annonarsClient.fetchClinvarStrucvars in case of no records (#163) (4578e36)
• Associated Conditions Card correctly sorts diseases and panels (#513) (#159) (f35c4cb)
• Change hgvs.t and hgvs.p and fix pubator comments (#176) (#177) (6ece409)
• Consequences skeleton is now message (#506) (#130) (e58e0f9)
• do not prefix chromosomes with chr in igv link (#189) (#190) (90b9218)
• do not show skeleton loader if clinvar info is missing (#208) (8ad0981)
• do not throw on missing gene ClinVar data (#145) (6cbb057)
• genome browser not jumping to locus with grch38 (#202) (#203) (9eeff66)
• GenomeBrowserCard with configuable nginx URL (#147) (0d9c814)
• import plotly landscape statically (#140) (9612373)
• Make buttons in Seqvars Scores card smaller (#520) (#137) (e5943bb)
• Make collapse buttons smaller for Population frqs card (#521) (#138) (49230a2)
• make rfl work with latest annonars clinvar changes (#205) (#207) (6461700)
• make StrucvarGeneListCard work without gene-details route (#143) (39de318)
• Nginx response 500 fro tracks reqeusts (#180) (8c5d219)
• Omit permanent circular ncbi (#512) (#139) (3836272)
• proper conditions for VSkeletonLoader in GeneConditionsCard (#164) (d18412c)
• Proper counting in variation landscape plot (#495) (#128) (8f4a0a7)
• Pubtator3 new API responses adaptation (#643) (#188) (73436d9)
• stores/sevarInfo can limit csq to HGNC ID (#154) (3d15507)
• Variation Landscape downsampling (#462) (#122) (29e5a6d)
• VariationLandscapePlotly with empty clinvar info (#148) (4f349ce)

Miscellaneous Chores

• set next release to v0.6.2 (0a98997)

0.6.1 (2024-02-09)

Features

• use transcript infos from mehari server (#115) (#118) (94c5e2e)

Bug Fixes

• proper display of SpliceAI scores (#104) (#117) (1507600)

0.6.0 (2024-02-08)

Documentation

• adding Zenodo DOI badge (#102) (6740705)

0.5.0 (2024-02-06)

Features

• adding store/cadaPrio (#76) (4061290)
• adding store/geneInfo (#72) (92450e3)
• even more types for stores and apis (#90) (94ecb9f)
• expose router in setupMountedComponents (#75) (e62f009)
• fix parsing of non-uppercase SvType (bihealth/reev#434) (#95) (761d416)
• further improvements to literature highlighting (#93) (538bfc0)
• integrate plotly-based clinvar landscape (#94) (ec7641e)
• make API base urls configurable (#66) (7bd9dfd)
• more types in stores and slot in GenePathogenicityCard (#89) (9be207e)

Bug Fixes

• adjusting api/viguno to reality (#70) (8aa9a87)
• Allow components to be used in exports (#71) (6f57554)
• api/annonars type GeneInfoResult (#68) (4476c13)
• api/mehari SeqvarResultEntry parsing (#69) (65b5d96)
• cada-prio API result types (#83) (18d85a2)
• color coding of gene-clinvar plots (bihealth/reev#445) (#97) (79658a3)
• display score with largest absolute value for MMSplice (#444) (#100) (fd35564)
• display splicing scores even when non-coding (bihealth/reev#446) (#99) (d30f492)
• fixing rank display issues triggering bug (bihealth/reev#433) (#96) (fcf376e)
• more adjustments and fixes (#92) (1f2f8b2)
• remove pinia export from stores (#85) (78406e6)
• remove requirement of genes having HPO terms (bihealth/reev#447) (#98) (d570f1c)
• removing card component margins (#74) (e62913b)
• use genomeRelease in geneInfo store (#73) (6a9672d)

0.4.5 (2024-01-31)

⚠ BREAKING CHANGES

• more comprehensive usage of types (#65)

Bug Fixes

• more comprehensive usage of types (#64) (c1c2ff3)
• more comprehensive usage of types (#65) (74758a2)
• no more @/includes in case of using as linked src (#62) (649b423)

0.4.4 (2024-01-31)

Bug Fixes

• npm package contents (was empty, fix in CI) (#60) (c05525a)

0.4.3 (2024-01-31)

Features

• adding api/annonars (#36) (7edc750)
• adding api/cadaPrio (#37) (3ad1082)
• adding api/mehari (#35) (6709873)
• adding api/variantValidator (#38) (d9bfe61)
• adding bucket file for components (#56) (c08d7ea)
• adding GeneClinvarCard (#29) (6df53a2)
• adding GeneConditionsCard (#27) (e8785d3)
• adding GeneConditionsCard (#32) (25c3fe6)
• adding GeneExpressionCard component (#26) (b491224)
• adding GeneLiteratureCard (#30) (ad041aa)
• adding GeneOverviewCard (#31) (9007269)
• adding GenePathogenicityCard with storybook and tests (#25) (01b5040)
• adding GenomeBrowserCard (#45) (3ecd6a1)
• adding modules for genome builds and genomic variants (#28) (971478b)
• adding more protobuf files and generated code (#49) (9825a59)
• adding protobuf to typescript generation (#21) (26aa8c5)
• adding SeqvarBeaconNetworkCard (#54) (c42bff1)
• adding SeqvarClinvarCard (#48) (1cc2b6d)
• adding SeqvarConsequencesCard (#47) (d5df980)
• adding SeqvarScoresCard (#51) (931aeec)
• adding SeqvarsFreqCard (#52) (2426ad1)
• adding SeqvarToolsCard (#53) (742b84d)
• adding SeqvarVariantValidatorCard (#55) (7d08b24)
• adding store/seqvarInfo, api/viguno, more api/annonars (#50) (99ceaee)
• adding store/strucvarInfo (#41) (9c84f26)
• adding StrucvarClinvarCard (#46) (0578f02)
• adding StrucvarGeneListCard (#44) (637db05)
• adding StrucvarToolsCard (#42) (ae5ae68)
• completing api/dotty (#39) (8e65aba)
• DocsLink as first component in Storybook (#22) (9e93ee1)
• enable publishing to central npm (#58) (845cac5)
• initial storybook setup (#19) (1104401)
• updates and story for StrucvarsToolCard (#43) (8713020)

0.4.2 (2024-01-25)

Bug Fixes

• actually working library (#17) (9009096)

0.4.1 (2024-01-25)

Miscellaneous Chores

• release as v0.4.1 (0a99631)

Changelog