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restructure installation instructions to clone first
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tedil committed Jan 15, 2025
1 parent 513f7b2 commit 669b2c8
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9 changes: 2 additions & 7 deletions README.md
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Expand Up @@ -9,17 +9,12 @@ Tooling for connecting GitLab, pipelines, and SODAR at CUBI.

## Getting Started

Prerequisites when using conda:
Clone CUBI-TK, create a conda environment (containing `hashdeep`) and install using [`uv`](https://docs.astral.sh/uv/).

```bash
$ git clone [email protected]:bihealth/cubi-tk.git
$ conda env create -n cubi-tk -f environment.yaml
$ conda activate cubi-tk
```

Clone CUBI-TK and install.

```bash
$ git clone [email protected]:bihealth/cubi-tk.git
$ cd cubi-tk
$ uv python pin 3.12
$ uv sync
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9 changes: 2 additions & 7 deletions docs_manual/installation.rst
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Expand Up @@ -4,18 +4,13 @@
Installation
============

Prerequisites when using conda:
Clone CUBI-TK, create a conda environment (containing `hashdeep`) and install using [`uv`](https://docs.astral.sh/uv/).

.. code-block:: bash
$ git clone [email protected]:bihealth/cubi-tk.git
$ conda env create -n cubi-tk -f environment.yaml
$ conda activate cubi-tk
Clone CUBI-TK and install:

.. code-block:: bash
$ git clone [email protected]:bihealth/cubi-tk.git
$ cd cubi-tk
$ uv python pin 3.12
$ uv sync
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