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bigbio · Nov 30, 2024 · fe1739e · fe1739e
1 parent dbfc89d
commit fe1739e
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/quantmsutils/mzml/mzml_statistics.py b/quantmsutils/mzml/mzml_statistics.py
@@ -290,11 +290,8 @@ def batch_write_bruker_d(file_name: str, output_path: str, batch_size: int = 100
             if "MonoisotopicMz" in columns:
                 base_columns.insert(-1, "MonoisotopicMz")
 
-            query = f"""
-            SELECT 
-                {', '.join(base_columns)}
-            FROM frames
-            """
+            safe_columns = [col for col in base_columns if col.replace(" ", "").isalnum()] # Remove spaces
+            query = f"""SELECT {', '.join(safe_columns)} FROM frames """
 
             try:
                 # Stream data in batches