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[ENH] BEP001 - qMRI maps and some additional metadata #690

Merged
merged 83 commits into from
Jan 13, 2021
Merged

[ENH] BEP001 - qMRI maps and some additional metadata #690

merged 83 commits into from
Jan 13, 2021

Commits on Dec 21, 2020

  1. Edit non-param table, add legacy list

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  2. Add table for parametric maps

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  3. Add description for parametric maps.

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  4. Add templates for file collections

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  5. Typo, wording for NumberShots

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  6. Add spoiling metadata

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  7. Update entity schema src

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  8. split

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  9. Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d… 

    …ata.md

Co-authored-by: Taylor Salo <[email protected]>
    @agahkarakuzu @tsalo @sappelhoff
    2 people authored and sappelhoff committed Dec 21, 2020
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  10. Wording

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  11. a.u. --> arbitrary

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  12. legacy --> deprecated

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  13. mod --> label

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  14. ADD explanations about fundamental contrasts

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  15. Drop part from qMaps

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  16. update entity table

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  17. STY: Use .md links, fix table formatting

    @effigies @sappelhoff
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  18. Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d… 

    …ata.md

Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies @sappelhoff
    2 people authored and sappelhoff committed Dec 21, 2020
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  19. [ADD] qMRI Appendix

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  20. ADD SA2RAGE and qMRI appendix links

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  21. Entity and entity tables 

    - Avoid conflict with bids-standard#692 
- Add applicable TB1map file collections
    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  22. ADD MixingTime & Improve NumberShots

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  23. Consistency

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  24. Address comment

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  25. map units

    @agahkarakuzu @sappelhoff
    agahkarakuzu authored and sappelhoff committed Dec 21, 2020
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  26. Super minot textual edits

    @Gilles86 @sappelhoff
    Gilles86 authored and sappelhoff committed Dec 21, 2020
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  27. Some small textual fixes in 10-file-collections

    @Gilles86 @sappelhoff
    Gilles86 authored and sappelhoff committed Dec 21, 2020
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  28. re-render entity table after rebase 

    using  python tools/bids_schema.py entities src/schema/ src/99-appendices/04-entity-table.md
    @sappelhoff
    sappelhoff committed Dec 21, 2020
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  29. fix call to use entitytable, not entities

    @sappelhoff
    sappelhoff committed Dec 21, 2020
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  30. fix 09-entities using correct schema call

    @sappelhoff
    sappelhoff committed Dec 21, 2020
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Commits on Dec 30, 2020

  1. Drop latin phrases

    @agahkarakuzu
    agahkarakuzu committed Dec 30, 2020
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Commits on Dec 31, 2020

  1. Fix double quotes

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  2. Codeblock type fix

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  3. Fix article hyperlinks --> DOI

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  4. Punctuation fixes

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  5. Add section links iof italics

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  6. Drop etc.

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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  7. Rm Latin phrase

    @agahkarakuzu
    agahkarakuzu committed Dec 31, 2020
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Commits on Jan 4, 2021

  1. add missing newline at end of file

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  2. major syntax+linebreak overhaul qmri appendix

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  3. remaining qmri appendix syntax issues, except one to be discussed

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  4. fix table pipes in 10-file-collections.md

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  5. fix ill-formatted links

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  6. some more link fixes

    @sappelhoff
    sappelhoff committed Jan 4, 2021
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  7. one more link

    @sappelhoff
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  8. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  9. Fix parantheses

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  10. Make spoiling-relevant requirements more explicit

    @agahkarakuzu
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  11. Wording suggestion

    @agahkarakuzu
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  12. Add unit for MixingTime

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  13. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  14. Define R1,R2,R2star and re-arrange rows

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  15. Fix double quotes

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  16. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 4, 2021
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  17. Wording suggestion

    @agahkarakuzu
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  18. Rm verbosity

    @agahkarakuzu
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  19. Wording fix

    @agahkarakuzu
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  20. Number of shots array/number explanation

    @agahkarakuzu
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  21. Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d… 

    …ata.md

Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
    agahkarakuzu and effigies authored Jan 4, 2021
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  22. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  23. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  24. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  25. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  26. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  27. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  28. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  29. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  30. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
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  31. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
    agahkarakuzu and effigies authored Jan 4, 2021
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  32. Update src/99-appendices/11-qmri.md 

    Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
    agahkarakuzu and effigies authored Jan 4, 2021
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  33. Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d… 

    …ata.md

Co-authored-by: Chris Markiewicz <[email protected]>
    @agahkarakuzu @effigies
    agahkarakuzu and effigies authored Jan 4, 2021
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Commits on Jan 6, 2021

  1. fix links by converting to lowercase

    @sappelhoff
    sappelhoff committed Jan 6, 2021
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  2. STY: Align table fences

    @effigies
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  3. STY: Fix link syntax, one more table fence

    @effigies
    effigies committed Jan 6, 2021
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  4. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 6, 2021
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  5. Fix paranthesis

    @agahkarakuzu
    agahkarakuzu committed Jan 6, 2021
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  6. STY: Align table fences

    @effigies
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Commits on Jan 8, 2021

  1. Move UNIT1 to non-parametric table

    @agahkarakuzu
    agahkarakuzu committed Jan 8, 2021
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  2. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 8, 2021
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  3. Fix typo

    @agahkarakuzu
    agahkarakuzu committed Jan 8, 2021
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  4. Drop the term grayscale

    @agahkarakuzu
    agahkarakuzu committed Jan 8, 2021
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  5. Align table fence

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  6. STY: Align table fences

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