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STY: Fix remark complaints
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effigies committed Jun 28, 2023
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15 changes: 7 additions & 8 deletions src/derivatives/functional-derivatives.md
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Expand Up @@ -65,7 +65,6 @@ A guide for using macros can be found at
-->
{{ MACROS___make_sidecar_table("derivatives.fmri.FunctionalMapFields") }}


## Time series

A time series is a chronologically ordered series of numeric values.
Expand All @@ -83,9 +82,9 @@ In the case of spatial time series files, the notion of column name does not
apply, so column-level metadata may be applied to the entire file.
In addition, the following fields apply to the entire file in all cases:

| Field name | Definition |
| :---------------- | :----------------------------------------------------------------------------------------------------------------------------------------------------------- |
| SamplingFrequency | REQUIRED. Sampling frequency (in Hz) of all columns in the file. Special value `"TR"` indicates one sample per volume of a corresponding BOLD series. |
| Field name | Definition |
| :---------------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| SamplingFrequency | REQUIRED. Sampling frequency (in Hz) of all columns in the file. Special value `"TR"` indicates one sample per volume of a corresponding BOLD series. |
| StartTime | OPTIONAL. Start time (in seconds) in relation to the start of acquisition of the first volume in the corresponding imaging file (negative values are allowed). |

Note that there are several differences with these fields in
Expand Down Expand Up @@ -400,7 +399,7 @@ should be named `a_comp_cor_00`.

The following reserved words indicate common algorithms:

| Column name | Description |
| ------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `[a|t|w|c]_comp_cor_<x>` | CompCor (Behzadi, et al., 2007) calculated with voxels chosen based on: `a`: anatomically derived ROIs (white matter and CSF), `t`: temporal variance, `w`: white matter voxels only, `c`: CSF voxels only |
| `melodic_<x>` | Columns from the mixing matrix in FSL MELODIC |
| Column name | Description |
| --------------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `[a\|t\|w\|c]_comp_cor_<x>` | CompCor (Behzadi, et al., 2007) calculated with voxels chosen based on: `a`: anatomically derived ROIs (white matter and CSF), `t`: temporal variance, `w`: white matter voxels only, `c`: CSF voxels only |
| `melodic_<x>` | Columns from the mixing matrix in FSL MELODIC |

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