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various fixes to events definitions, updated README
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irisgroen authored and sappelhoff committed Mar 1, 2019
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This dataset contains ECoG as well as fMRI recordings from a single patient obtained while the patient performed three different visual tasks. The ECoG data was recorded at NYU School of Medicine (SOM). The fMRI data was recorded post-operatively at NYU Department of Psychology (NYU). A separate pre-operative T1weighted MRI scan was collected at SOM. These data were collected as part of an NIH Brain Initiative supported project.
Overview
--------
This dataset contains ECoG as well as fMRI recordings from a single patient obtained
while the patient performed three different visual tasks (spatialobject, spatialpattern,
and temporalpattern). The ECoG data was recorded at NYU School of Medicine (SOM).
The fMRI data was recorded post-operatively at NYU Department of Psychology (NYU).
A separate pre-operative T1weighted MRI scan was collected at SOM.

The dataset is as of yet unpublished. The data was collected by Jonathan Winawer (NYU) and Stephanie Montenegro (NYU). The BIDS formatting was performed by Iris Groen (NYU) with help from Giovanni Piantoni (UMC Utrecht) and Dora Hermes (UMC Utrecht). The project is funded by the National Institute Of Mental Health of the National Institutes of Health under Award Number R01MH111417 to Natalia Petridou (UMC Utrecht) and Jonathan Winawer. The ECoG data collection was facilitated by Orrin Devinsky (NYU SOM) and Adeen Flinker (NYU SOM).
These data were collected as part of an NIH Brain Initiative supported project. The
overarching goal of this project is to build empirically supported models of visual
and somatosensory population responses by linking together neural signals (measured
with ECoG) and BOLD responses (measured with fMRI). This is a visual experimental
dataset; the same tasks were run in both modalities to allow for comparison of the
ECoG and BOLD responses. For details about the tasks, see the `Details about the
visual tasks` section.


Citing this dataset
-------------------
The dataset is as of yet (02-26-2019) unpublished. The data was collected by
Jonathan Winawer (NYU) and Stephanie Montenegro (NYU). The BIDS formatting
was performed by Iris Groen (NYU) with help from Giovanni Piantoni (UMC Utrecht)
and Dora Hermes (UMC Utrecht). The project is funded by the National Institute Of
Mental Health of the National Institutes of Health under Award Number R01MH111417
to Natalia Petridou (UMC Utrecht) and Jonathan Winawer. The ECoG data collection
was facilitated by Orrin Devinsky (NYU SOM) and Adeen Flinker (NYU SOM).

Please see http://umcu-nyu-brain.wikidot.com for further information.

Please contact Iris Groen ([email protected]) for questions.

License
-------
This dataset is made available under the Public Domain Dedication and License \\nv1.0,
whose full text can be found at \\nhttp://www.opendatacommons.org/licenses/pddl/1.0/.


Format
------
It is formatted according to BIDS version 1.1.5 and the BIDS standard extension
for iEEG (BEP010), which can be found here:

https://bids-specification.readthedocs.io/en/latest/04-modality-specific-files/04-intracranial-electroencephalography.html

Note that BEP010 was not yet integrated in the main BIDS-spec by 02-26-2019.

Details about the visual tasks
----------------------------
All tasks involved brief presentations of a single visual stimulus presented at 8
degrees of visual angle. All stimuli were band-pass filtered to have single
spatial frequency of 3 cycles per degree. During the 'spatialobject' task, images
Of houses, faces and letters were shown. During the 'spatial pattern' task, images
of randomly generated curved line segments were shown that were systematically varied
in the level of contrast and density, as well as three types of gratings. During
the 'temporal pattern', the same pattern stimuli were shown at fixed (high) contrast,
either for one presentation per trial (one-pulse) or two presentations (two-pulse).
For the one-pulse stimuli, stimulus duration was varied; for the two-pulse stimuli,
inter-stimulus-interval (ISI) was varied. Please see events.json files for details.


Contact
----------------------------
Please contact Iris Groen ([email protected]) for questions.
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onset duration ISI trial_type trial_name stim_file event_sample
3 0.5 0 132 LETTERS stim_132.png 1536
4.4336 0.5 0 131 FACES stim_131.png 2270
5.7676 0.5 0 132 LETTERS stim_132.png 2953
7.0508 0.5 0 131 FACES stim_131.png 3610
8.6836 0.5 0 132 LETTERS stim_132.png 4446
10.0352 0.5 0 132 LETTERS stim_132.png 5138
11.7344 0.5 0 131 FACES stim_131.png 6008
13.1016 0.5 0 131 FACES stim_131.png 6708
14.5684 0.5 0 132 LETTERS stim_132.png 7459
16.0684 0.5 0 131 FACES stim_131.png 8227
17.8027 0.5 0 131 FACES stim_131.png 9115
19.4531 0.5 0 133 HOUSES stim_133.png 9960
21.1855 0.5 0 133 HOUSES stim_133.png 10847
22.7031 0.5 0 133 HOUSES stim_133.png 11624
24.2207 0.5 0 133 HOUSES stim_133.png 12401
25.5195 0.5 0 133 HOUSES stim_133.png 13066
27.2695 0.5 0 132 LETTERS stim_132.png 13962
28.6211 0.5 0 132 LETTERS stim_132.png 14654
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31.4531 0.5 0 132 LETTERS stim_132.png 16104
32.7051 0.5 0 131 FACES stim_131.png 16745
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37.3047 0.5 0 133 HOUSES stim_133.png 19100
38.8711 0.5 0 133 HOUSES stim_133.png 19902
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50.6406 0.5 0 132 LETTERS stim_132.png 25928
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53.8242 0.5 0 131 FACES stim_131.png 27558
55.5078 0.5 0 133 HOUSES stim_133.png 28420
onset duration ISI trial_type trial_name stim_file stim_file_index sample
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4.4336 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-01.mat 5 2270
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17.8027 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-01.mat 11 9115
19.4531 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-01.mat 29 9960
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31.4531 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-01.mat 17 16104
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50.6406 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-01.mat 13 25928
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55.5078 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-01.mat 34 28420
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@@ -1,37 +1,37 @@
onset duration ISI trial_type trial_name stim_file event_sample
3 0.5 0 133 HOUSES stim_133.png 1536
4.7012 0.5 0 132 LETTERS stim_132.png 2407
6.0684 0.5 0 133 HOUSES stim_133.png 3107
7.3848 0.5 0 131 FACES stim_131.png 3781
9.0508 0.5 0 132 LETTERS stim_132.png 4634
10.584 0.5 0 133 HOUSES stim_133.png 5419
12.2852 0.5 0 133 HOUSES stim_133.png 6290
13.8027 0.5 0 132 LETTERS stim_132.png 7067
15.0527 0.5 0 131 FACES stim_131.png 7707
16.8027 0.5 0 132 LETTERS stim_132.png 8603
18.3027 0.5 0 131 FACES stim_131.png 9371
20.0195 0.5 0 132 LETTERS stim_132.png 10250
21.4531 0.5 0 132 LETTERS stim_132.png 10984
23.0859 0.5 0 132 LETTERS stim_132.png 11820
24.3691 0.5 0 132 LETTERS stim_132.png 12477
25.7695 0.5 0 131 FACES stim_131.png 13194
27.0703 0.5 0 133 HOUSES stim_133.png 13860
28.8047 0.5 0 133 HOUSES stim_133.png 14748
30.4199 0.5 0 131 FACES stim_131.png 15575
31.8711 0.5 0 133 HOUSES stim_133.png 16318
33.5215 0.5 0 131 FACES stim_131.png 17163
34.7871 0.5 0 133 HOUSES stim_133.png 17811
36.3555 0.5 0 132 LETTERS stim_132.png 18614
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39.5215 0.5 0 133 HOUSES stim_133.png 20235
41.0547 0.5 0 131 FACES stim_131.png 21020
42.6387 0.5 0 131 FACES stim_131.png 21831
44.0059 0.5 0 133 HOUSES stim_133.png 22531
45.6895 0.5 0 131 FACES stim_131.png 23393
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48.373 0.5 0 133 HOUSES stim_133.png 24767
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51.1895 0.5 0 132 LETTERS stim_132.png 26209
52.6738 0.5 0 133 HOUSES stim_133.png 26969
54.0898 0.5 0 131 FACES stim_131.png 27694
55.5078 0.5 0 131 FACES stim_131.png 28420
onset duration ISI trial_type trial_name stim_file stim_file_index sample
3.0000 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-02.mat 29 1536
4.7012 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-02.mat 19 2407
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7.3848 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-02.mat 11 3781
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25.7695 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-02.mat 6 13194
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54.0898 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-02.mat 4 27694
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Original file line number Diff line number Diff line change
@@ -1,37 +1,37 @@
onset duration ISI trial_type trial_name stim_file event_sample
3 0.5 0 132 LETTERS stim_132.png 1536
4.4336 0.5 0 131 FACES stim_131.png 2270
5.7676 0.5 0 132 LETTERS stim_132.png 2953
7.0508 0.5 0 131 FACES stim_131.png 3610
8.6836 0.5 0 132 LETTERS stim_132.png 4446
10.0352 0.5 0 132 LETTERS stim_132.png 5138
11.7344 0.5 0 131 FACES stim_131.png 6008
13.1016 0.5 0 131 FACES stim_131.png 6708
14.5684 0.5 0 132 LETTERS stim_132.png 7459
16.0684 0.5 0 131 FACES stim_131.png 8227
17.8027 0.5 0 131 FACES stim_131.png 9115
19.4531 0.5 0 133 HOUSES stim_133.png 9960
21.1855 0.5 0 133 HOUSES stim_133.png 10847
22.7031 0.5 0 133 HOUSES stim_133.png 11624
24.2207 0.5 0 133 HOUSES stim_133.png 12401
25.5195 0.5 0 133 HOUSES stim_133.png 13066
27.2695 0.5 0 132 LETTERS stim_132.png 13962
28.6211 0.5 0 132 LETTERS stim_132.png 14654
30.0039 0.5 0 131 FACES stim_131.png 15362
31.4531 0.5 0 132 LETTERS stim_132.png 16104
32.7051 0.5 0 131 FACES stim_131.png 16745
34.1367 0.5 0 133 HOUSES stim_133.png 17478
35.7539 0.5 0 133 HOUSES stim_133.png 18306
37.3047 0.5 0 133 HOUSES stim_133.png 19100
38.8711 0.5 0 133 HOUSES stim_133.png 19902
40.4727 0.5 0 131 FACES stim_131.png 20722
42.0723 0.5 0 132 LETTERS stim_132.png 21541
43.4551 0.5 0 132 LETTERS stim_132.png 22249
44.7715 0.5 0 133 HOUSES stim_133.png 22923
46.1895 0.5 0 132 LETTERS stim_132.png 23649
47.4395 0.5 0 131 FACES stim_131.png 24289
49.1406 0.5 0 131 FACES stim_131.png 25160
50.6406 0.5 0 132 LETTERS stim_132.png 25928
52.2734 0.5 0 133 HOUSES stim_133.png 26764
53.8242 0.5 0 131 FACES stim_131.png 27558
55.5078 0.5 0 133 HOUSES stim_133.png 28420
onset duration ISI trial_type trial_name stim_file stim_file_index sample
3.0000 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 15 1536
4.4336 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 5 2270
5.7676 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 22 2953
7.0508 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 8 3610
8.6836 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 24 4446
10.0352 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 23 5138
11.7344 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 10 6008
13.1016 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 1 6708
14.5684 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 20 7459
16.0684 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 3 8227
17.8027 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 11 9115
19.4531 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 29 9960
21.1855 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 25 10847
22.7031 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 32 11624
24.2207 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 33 12401
25.5195 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 27 13066
27.2695 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 18 13962
28.6211 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 16 14654
30.0039 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 4 15362
31.4531 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 17 16104
32.7051 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 12 16745
34.1367 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 35 17478
35.7539 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 26 18306
37.3047 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 31 19100
38.8711 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 30 19902
40.4727 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 2 20722
42.0723 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 21 21541
43.4551 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 19 22249
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46.1895 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 14 23649
47.4395 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 7 24289
49.1406 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 6 25160
50.6406 0.5000 0.0000 132 LETTERS sub-som682_ses-somecog01_task-spatialobject_run-03.mat 13 25928
52.2734 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 36 26764
53.8242 0.5000 0.0000 131 FACES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 9 27558
55.5078 0.5000 0.0000 133 HOUSES sub-som682_ses-somecog01_task-spatialobject_run-03.mat 34 28420
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