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Merge pull request #64 from bids-standard/no_paramall
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Revert "_param-all"
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Lestropie authored Sep 13, 2022
2 parents 4118ce0 + c13031e commit 2b40cb7
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8 changes: 4 additions & 4 deletions src/05-derivatives/05-diffusion-derivatives.md
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Expand Up @@ -97,14 +97,14 @@ rather than the image data).

- Files "`<source_keywords>[_space-<space>]_model-<label>_param-<param*>_model.nii[.gz]`"
provide data corresponding to the various requisite [model parameters](#paramdef-model).

In cases where *all* [model parameters](#paramdef-model) are contained within a single image
file, entity "`_param-`" nevertheless MUST be included, with value "`all`"; e.g.:
file, entity "`_param-`" MUST NOT be included; e.g.:
```Text
<pipeline_name>/
sub-<participant_label>/
dwi/
<source_keywords>[_space-<space>]_model-<label>_param-all_model.nii[.gz]
[<source_keywords>[_space-<space>]_model-<label>_param-all_model.json]
<source_keywords>[_space-<space>]_model-<label>_model.nii[.gz]
<source_keywords>[_space-<space>]_model-<label>_model.json
```

Expand Down Expand Up @@ -243,7 +243,7 @@ keywords for "`_param-`" fields, which are listed below.
| ----------- | ----------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `bs` | Ball-and-Stick(s) model \[[Behrens2003](#behrens2003)\],\[[Behrens2007](#behrens2007)\],\[[Jbabdi2012](#jbabdi2012)\] | One [spherical coordinates](#data-spherical) image with parameter name "`sticks`", providing both fibre volume fractions and orientations using polar angles;<br>Optional scalar images with parameter names {"`bzero`", "`dmean`", "`dstd`"} providing the model-estimated *b*=0 signal intensity, mean stick diffusivity, and standard deviation of stick diffusivities respectively |
| `csd` | Constrained Spherical Deconvolution \[[Tournier2007](#tournier2007)\],\[[Descoteaux2009](#descoteaux2009)\],\[[Jeurissen2014](#jeurissen2014)\] | [Spherical harmonics](#data-sh) image<br>If a multi-tissue decomposition is performed, provide one individual 4D image per tissue, with "`_param-<param>`" entity being an abbreviation of the tissue estimated by that particular ODF |
| `tensor` | Diffusion Tensor \[[Basser1994](#basser1994)\] | Single [parameter vectors](#data-param) image with parameter name "`all`" with 6 volumes in the order: *D<sub>xx</sub>*, *D<sub>xy</sub>*, *D<sub>xz</sub>*, *D<sub>yy</sub>*, *D<sub>yz</sub>*, *D<sub>zz</sub>*<br>OR<br>Tensor coefficients as [parameter vectors](#data-param) image with parameter name "`tensor`";<br>Estimated *b*=0 intensity as [scalar](#data-scalar) image with parameter name "`bzero`" |
| `tensor` | Diffusion Tensor \[[Basser1994](#basser1994)\] | Single [parameter vectors](#data-param) image with no `param` entity with 6 volumes in the order: *D<sub>xx</sub>*, *D<sub>xy</sub>*, *D<sub>xz</sub>*, *D<sub>yy</sub>*, *D<sub>yz</sub>*, *D<sub>zz</sub>*<br>OR<br>Tensor coefficients as [parameter vectors](#data-param) image with parameter name "`tensor`";<br>Estimated *b*=0 intensity as [scalar](#data-scalar) image with parameter name "`bzero`" |

The JSON sidecar for the intrinsic diffusion model parameters may contain
the following key/value pairs irrespective of the particular model:
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