try running in circle ci #4
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--- | |
name: test latest image | |
on: | |
push: | |
branches: ['*'] | |
schedule: | |
- cron: 0 0 1 * * | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test_dataset_without_session: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y tree | |
- name: pull docker image | |
run: docker pull bids/hcppipelines | |
- name: print version | |
run: | | |
docker run -t --rm --read-only \ | |
--tmpfs /tmp \ | |
--tmpfs /var/tmp \ | |
bids/hcppipelines --help | |
docker run -t --rm --read-only \ | |
--tmpfs /tmp \ | |
--tmpfs /var/tmp \ | |
bids/hcppipelines --version | |
- name: get data | |
run: | | |
wget https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/utils/get_data_from_osf.sh | |
bash get_data_from_osf.sh hcp_example_bids_v3 | |
- name: prepare output dir | |
run: | | |
mkdir -p ${HOME}/outputs | |
- name: participant 01 | |
run: | | |
docker run -t --rm --read-only \ | |
-v ${HOME}/data/hcp_example_bids_v3:/bids_dataset \ | |
-v ${HOME}/outputs:/outputs \ | |
--tmpfs /tmp \ | |
--tmpfs /var/tmp \ | |
bids/hcppipelines \ | |
/bids_dataset \ | |
/outputs \ | |
participant \ | |
--participant_label 100307 \ | |
--stages PreFreeSurfer \ | |
--license_key="*CxjskRdd7" \ | |
--n_cpus 2 | |
- name: check output | |
run: tree ${HOME}/outputs |