Skip to content

[pre-commit.ci] auto fixes from pre-commit.com hooks #2

[pre-commit.ci] auto fixes from pre-commit.com hooks

[pre-commit.ci] auto fixes from pre-commit.com hooks #2

Workflow file for this run

---
name: test latest image
on:
push:
branches: ['*']
schedule:
- cron: 0 0 1 * *
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test_dataset_without_session:
runs-on: ubuntu-latest
steps:
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install -y tree
- name: pull docker image
run: docker pull bids/hcppipeline
- name: print version
run: |
docker run -t --rm --read-only \
--tmpfs /tmp \
--tmpfs /var/tmp \
bids/hcppipelines --help
docker run -t --rm --read-only \
--tmpfs /tmp \
--tmpfs /var/tmp \
bids/hcppipelines --version
- name: get data
run: |
wget https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/utils/get_data_from_osf.sh
bash get_data_from_osf.sh hcp_example_bids_v3
- name: prepare output dir
run: |
mkdir -p ${HOME}/outputs
- name: participant 01
run: |
docker run -t --rm --read-only \
-v ${HOME}/data/hcp_example_bids_v3:/bids_dataset \
-v ${HOME}/outputs:/outputs \
--tmpfs /tmp \
--tmpfs /var/tmp \
bids/hcppipelines \
/bids_dataset \
/outputs \
participant \
--participant_label 100307 \
--stages PreFreeSurfer \
--license_key="*CxjskRdd7" \
--n_cpus 2
- name: check output
run: tree ${HOME}/outputs