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fix: improve logging maintainability and temporarily remove json logging configuration #289

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fix: improve logging maintainability and temporarily remove json logging configuration

fix: improve logging maintainability and temporarily remove json logging configuration #289

Workflow file for this run

.github/workflows/main.yml at 8ef0396
name: CI-CD
# only run on pushes to main or pull requests
on:
push:
branches: ["main"]
pull_request:
branches: ["*"]
jobs:
################################################################################################
# Unit-Tests: Run unit tests using pytest
################################################################################################
Unit-Tests:
runs-on: ${{ matrix.os }}
timeout-minutes: 15 # Consider increasing timeout
strategy:
matrix:
os: [ubuntu-latest, macos-latest, macos-14] # , windows-latest removed for now
env: ["py310", "py311", "py312"]
steps:
- uses: actions/checkout@v4
- name: Install Pixi
uses: prefix-dev/[email protected]
with:
environments: ${{ matrix.env }}
pixi-version: v0.36.0
cache: true
locked: false # wont be the same because of the tag
- name: Run pytest
run: |
pixi run -e ${{ matrix.env }} test
- name: Upload coverage report artifact to be used by Codecov
# only upload if matrix.os is ubuntu-latest and matrix.python-version is 3.12
if: matrix.os == 'ubuntu-latest' && matrix.env == 'py312'
uses: actions/upload-artifact@v4
with:
name: coverage-report
path: coverage-report
################################################################################################
# Build-Docs: Build documentation using mkdocs
################################################################################################
Build-Docs:
runs-on: ${{ matrix.os }}
timeout-minutes: 15 # Consider increasing timeout
strategy:
matrix:
os: [ubuntu-latest] # , windows-latest removed for now
env: ["docs"]
steps:
- uses: actions/checkout@v4
- name: Install Pixi
uses: prefix-dev/[email protected]
with:
environments: ${{ matrix.env }}
pixi-version: v0.36.0
cache: true
locked: false # wont be the same because of the tag
- name: Test docs build
run: |
pixi run -e ${{ matrix.env }} doc-build
################################################################################################
# Publish-Docs: Publish documentation to GitHub Pages using mike only on main branch
################################################################################################
Publish-Docs:
needs: Build-Docs
if: github.ref == 'refs/heads/main'
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest]
env: ["docs"]
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Install Pixi
uses: prefix-dev/[email protected]
with:
environments: ${{ matrix.env }}
pixi-version: v0.36.0
cache: true
locked: false # wont be the same because of the tag
- name: Publish docs using mike
run: |
pixi run -e ${{ matrix.env }} mike deploy --push --update-aliases dev latest
################################################################################################
# Codecov: Run codecov to check coverage
################################################################################################
Code-Coverage:
needs: Unit-Tests
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Download coverage.xml artifact
uses: actions/download-artifact@v4
with:
name: coverage-report
path: coverage-report
- name: Use Codecov to track coverage
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: ./coverage-report/coverage.xml
fail_ci_if_error: true
verbose: true
name: codecov-umbrella
cd:
concurrency: release
permissions:
id-token: write
actions: read
contents: write
packages: write
issues: write
pull-requests: write
needs: Unit-Tests
if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/devel'
# Set up operating system
runs-on: ubuntu-latest
outputs:
released: ${{ steps.release.outputs.released }}
version: ${{ steps.release.outputs.version }}
tag: ${{ steps.release.outputs.tag }}
# Define job steps
steps:
- uses: actions/create-github-app-token@v1
id: app-token
with:
app-id: ${{ vars.SEMVERPOLICE_ID }}
private-key: ${{ secrets.SEMVER_APP_KEY }}
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Check-out repository
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Python Semantic Release
uses: python-semantic-release/python-semantic-release@master
id: release
with:
root_options: -v
github_token: ${{ secrets.GITHUB_TOKEN }}
git_committer_name: "gh-actions-semver"
pip-squeak:
needs: cd
if: needs.cd.outputs.released == 'true'
runs-on: ubuntu-latest
steps:
- name: Checkout the code with tag ${{ needs.cd.outputs.tag }}
uses: actions/checkout@v4
with:
ref: ${{ needs.cd.outputs.tag }}
- name: Set up Python 3.12
uses: actions/setup-python@v4
with:
python-version: 3.12
- name: Install Package Builder
run: python3 -m pip install build
- name: Build package
run: python3 -m build --sdist --wheel --outdir dist/
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
verbose: true
user: ${{ secrets.pypi_token }}
password: ${{ secrets.pypi_api }}
# does-the-pip-squeak:
# needs: pip-squeak
# runs-on: ${{ matrix.os }}
# strategy:
# matrix:
# os: [ubuntu-latest, macos-latest, windows-latest]
# python-version: ["3.12", "3.11", "3.10"]
# steps:
# - uses: actions/checkout@v3
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v4
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install using PyPi
# run: |
# pip install med-imagetools
# # autopipeline
# # pip install med-imagetools ==${{ needs.cd.outputs.version }}