feat: Adding a new page for STAR alignment #93
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JoshuaSiraj
reviewed
Nov 26, 2024
| STAR requires a genome index to efficiently align reads. Submit the following command in your SLURM script to generate it: | ||
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| ```bash | ||
| module load STAR/version_number |
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Make the use of version_number as a variable more explicit
Suggested change
| module load STAR/version_number | |
| module load STAR/<version_number> | |
| # Replace <version_number> with the desired version, e.g., module load STAR/2.7.9a |
JoshuaSiraj
reviewed
Nov 26, 2024
| ### Single-End Reads Example: | ||
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| ```bash | ||
| module load STAR/version_number |
There was a problem hiding this comment.
Make the use of version_number as a variable more explicit
Suggested change
| module load STAR/version_number | |
| module load STAR/<version_number> | |
| # Replace <version_number> with the desired version, e.g., module load STAR/2.7.9a |
JoshuaSiraj
reviewed
Nov 26, 2024
| ### Paired-End Reads Example: | ||
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| ```bash | ||
| module load STAR/version_number |
There was a problem hiding this comment.
Make the use of version_number as a variable more explicit
Suggested change
| module load STAR/version_number | |
| # Replace <version_number> with the desired version, e.g., module load STAR/2.7.9a |
JoshuaSiraj
reviewed
Nov 26, 2024
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| Create a text file listing all your sample FASTQ file pairs, with one sample per line. For paired-end data, include both files separated by a space, like this: | ||
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| **`samples.txt`:** |
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Assuming there is supposed to be a file here?
JoshuaSiraj
reviewed
Nov 26, 2024
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Move content from the other STAR.md to here
JoshuaSiraj
reviewed
Nov 26, 2024
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Move content to docs/disciplines/Bioinformatics/STAR.md and delete
JoshuaSiraj
requested changes
Nov 26, 2024
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@PeterHHer can you please review these changes |
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Created md file