change the name

GANDLF/entrypoints/cli_tool.py

@@ -3,7 +3,7 @@
 import click
 from .subcommands import cli_subcommands
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils import gandlf_logger_setup
+from GANDLF.utils import logger_setup
 from GANDLF import version
 
 

GANDLF/entrypoints/collect_stats.py

@@ -14,7 +14,7 @@
 
 from GANDLF.cli import copyrightMessage
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils import gandlf_logger_setup
+from GANDLF.utils import logger_setup
 
 
 def plot_all(df_training, df_validation, df_testing, output_plot_dir):
@@ -206,7 +206,7 @@ def new_way(model_dir: str, output_dir: str):
     + "`gandlf_collectStats` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_CollectStats",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/config_generator.py

@@ -4,7 +4,7 @@
 
 from GANDLF.cli import config_generator, copyrightMessage
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _generate_config(config: str, strategy: str, output: str):
@@ -47,7 +47,7 @@ def new_way(config, strategy, output):
     + "`gandlf_configGenerator` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_ConfigGenerator",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/construct_csv.py

@@ -14,7 +14,7 @@
 from GANDLF.utils import writeTrainingCSV
 
 from GANDLF.cli import copyrightMessage
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _construct_csv(
@@ -120,7 +120,7 @@ def new_way(
     + "`gandlf_constructCSV` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_ConstructCSV",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/debug_info.py

@@ -7,7 +7,7 @@
 from GANDLF import __version__
 from GANDLF.entrypoints import append_copyright_to_help
 from GANDLF.utils import get_git_hash
-from GANDLF.utils import gandlf_logger_setup
+from GANDLF.utils import logger_setup
 
 
 def _debug_info():
@@ -39,7 +39,7 @@ def new_way():
 )
 def old_way():
     _debug_info()
-    gandlf_logger_setup()
+    logger_setup()
 
 
 if __name__ == "__main__":

GANDLF/entrypoints/deploy.py

@@ -16,7 +16,7 @@
     copyrightMessage,
 )
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _deploy(
@@ -158,7 +158,7 @@ def new_way(
     + "`gandlf_deploy` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_Deploy",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/generate_metrics.py

@@ -10,7 +10,7 @@
 from GANDLF.cli import copyrightMessage
 from GANDLF.cli.generate_metrics import generate_metrics_dict
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _generate_metrics(
@@ -82,7 +82,7 @@ def new_way(
     + "`gandlf_generateMetrics` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_Metrics",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/optimize_model.py

@@ -9,7 +9,7 @@
 
 from GANDLF.cli import copyrightMessage, post_training_model_optimization
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _optimize_model(
@@ -61,7 +61,7 @@ def new_way(
     + "`gandlf_optimizeModel` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_OptimizeModel",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/patch_miner.py

@@ -10,7 +10,7 @@
 from GANDLF.cli.patch_extraction import patch_extraction
 from GANDLF.cli import copyrightMessage
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _mine_patches(input_path: str, output_dir: str, config: Optional[str]):
@@ -56,7 +56,7 @@ def new_way(input_csv: str, output_dir: str, config: Optional[str]):
     + "`gandlf_patchMiner` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_PatchMiner",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/preprocess.py

@@ -8,7 +8,7 @@
 from deprecated import deprecated
 from GANDLF.cli import preprocess_and_save, copyrightMessage
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _preprocess(
@@ -111,7 +111,7 @@ def new_way(
     + "`gandlf_preprocess` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_Preprocess",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/recover_config.py

@@ -9,7 +9,7 @@
 
 from GANDLF.cli import copyrightMessage, recover_config
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _recover_config(model_dir: Optional[str], mlcube: bool, output_file: str):
@@ -64,7 +64,7 @@ def new_way(model_dir, mlcube, output_file):
     + "`gandlf_recoverConfig` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_RecoverConfig",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/run.py

@@ -14,7 +14,7 @@
 from GANDLF import version
 from GANDLF.cli import main_run, copyrightMessage
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _run(
@@ -185,7 +185,7 @@ def new_way(
     + "`gandlf_run` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/split_csv.py

@@ -12,7 +12,7 @@
 
 from GANDLF.cli import copyrightMessage, split_data_and_save_csvs
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _split_csv(input_csv: str, output_dir: str, config_path: Optional[str]):
@@ -65,7 +65,7 @@ def new_way(input_csv: str, output_dir: str, config: Optional[str]):
     + "`gandlf_splitCSV` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     parser = argparse.ArgumentParser(
         prog="GANDLF_SplitCSV",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/entrypoints/verify_install.py

@@ -6,7 +6,7 @@
 from deprecated import deprecated
 
 from GANDLF.entrypoints import append_copyright_to_help
-from GANDLF.utils.gandlf_logger import gandlf_logger_setup
+from GANDLF.utils.logging import logger_setup
 
 
 def _verify_install():
@@ -43,7 +43,7 @@ def new_way():
     + "`gandlf_verifyInstall` script would be deprecated soon."
 )
 def old_way():
-    gandlf_logger_setup()
+    logger_setup()
     argparse.ArgumentParser(
         prog="GANDLF_VerifyInstall",
         formatter_class=argparse.RawTextHelpFormatter,

GANDLF/utils/__init__.py

@@ -68,4 +68,4 @@
 )
 
 from .data_splitter import split_data
-from .gandlf_logger import gandlf_logger_setup, InfoOnlyFilter
+from .logging import logger_setup, InfoOnlyFilter

GANDLF/utils/gandlf_logger.py → GANDLF/utils/logging.py

@@ -26,7 +26,7 @@ def _save_logs_in_file(log_file, config_path):
         logging.config.dictConfig(config_dict)
 
 
-def gandlf_logger_setup(log_file=None, config_path="logging_config.yaml") -> None:
+def logger_setup(log_file=None, config_path="logging_config.yaml") -> None:
     """
     It sets up the logger. Reads from logging_config.